Wall clock time and date at job start Mon Mar 30 2020 01:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46897 * 111.00269 * 2 1 4 4 H 1.08998 * 110.64375 * 31.85561 * 3 2 1 5 5 C 1.55156 * 110.72063 * 154.99911 * 3 2 1 6 6 C 1.54910 * 101.58580 * 153.86147 * 5 3 2 7 7 N 1.47426 * 104.83045 * 322.99129 * 6 5 3 8 8 C 1.36933 * 125.64768 * 204.08978 * 7 6 5 9 9 H 1.08003 * 120.00051 * 163.24501 * 8 7 6 10 10 C 1.38816 * 119.99911 * 343.24218 * 8 7 6 11 11 N 1.31614 * 119.99917 * 332.07841 * 10 8 7 12 12 Si 1.86806 * 119.99639 * 151.80517 * 10 8 7 13 13 H 1.48499 * 109.46585 * 180.27661 * 12 10 8 14 14 H 1.48496 * 109.46960 * 300.27614 * 12 10 8 15 15 H 1.48502 * 109.47177 * 60.27500 * 12 10 8 16 16 C 1.47021 * 108.70444 * 24.35239 * 7 6 5 17 17 H 1.08997 * 109.47561 * 180.02562 * 1 2 3 18 18 H 1.08999 * 109.46979 * 300.00850 * 1 2 3 19 19 H 1.09010 * 109.46652 * 59.99858 * 1 2 3 20 20 H 1.00902 * 110.99340 * 123.95150 * 2 1 3 21 21 H 1.08998 * 111.00753 * 35.78724 * 5 3 2 22 22 H 1.09001 * 111.03623 * 271.95236 * 5 3 2 23 23 H 1.08994 * 110.36699 * 204.14877 * 6 5 3 24 24 H 1.08999 * 110.45817 * 81.87179 * 6 5 3 25 25 H 0.96995 * 120.00029 * 353.69197 * 11 10 8 26 26 H 1.08997 * 109.88494 * 118.12737 * 16 7 6 27 27 H 1.08997 * 109.88462 * 239.30065 * 16 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3244 2.0406 0.5383 5 6 3.4201 1.4125 0.6133 6 6 4.0184 2.6656 -0.0733 7 7 3.4779 2.6387 -1.4446 8 6 4.0471 3.2340 -2.5386 9 1 3.7395 2.9439 -3.5324 10 6 5.0194 4.2103 -2.3702 11 7 5.0255 4.9524 -1.2833 12 14 6.3239 4.4654 -3.6828 13 1 7.2414 5.5551 -3.2634 14 1 7.0962 3.2101 -3.8638 15 1 5.6708 4.8340 -4.9646 16 6 2.2232 1.8723 -1.4420 17 1 -0.3634 -1.0276 0.0005 18 1 -0.3633 0.5140 0.8899 19 1 -0.3633 0.5139 -0.8901 20 1 1.8304 -0.5261 0.7814 21 1 3.9840 0.5171 0.3519 22 1 3.3769 1.5426 1.6947 23 1 5.1064 2.6042 -0.0931 24 1 3.6995 3.5714 0.4424 25 1 4.3000 4.8813 -0.6434 26 1 1.3966 2.5132 -1.7486 27 1 2.3067 1.0221 -2.1189 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000150195635.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:27 Heat of formation + Delta-G solvation = 22.860131 kcal Electronic energy + Delta-G solvation = -10094.268574 eV Core-core repulsion = 8273.559795 eV Total energy + Delta-G solvation = -1820.708779 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -37.97398 -34.71224 -31.95054 -29.10105 -27.24320 -24.93417 -23.37250 -20.31137 -19.67410 -17.46085 -15.75373 -14.95809 -14.31589 -13.76880 -13.31266 -13.11679 -12.98954 -12.10903 -11.63349 -11.48911 -10.69166 -10.63931 -10.43749 -10.40586 -9.99200 -9.93921 -9.46486 -8.35896 -8.21235 -6.84770 -6.02903 -3.06367 3.54816 3.59458 3.77098 4.41699 4.69834 5.19286 5.27894 5.44592 5.52865 5.57682 5.74789 5.84354 5.98142 6.11283 6.32728 6.44715 6.65537 6.79248 7.00465 7.10896 7.39722 7.58320 7.89118 8.56157 9.10592 9.89527 10.46478 11.29483 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.095399 B = 0.012283 C = 0.011605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 293.434359 B = 2279.085755 C = 2412.074197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.685 5.685 3 C 0.071 3.929 4 H 0.048 0.952 5 C -0.139 4.139 6 C 0.147 3.853 7 N -0.604 5.604 8 C -0.333 4.333 9 H 0.064 0.936 10 C -0.028 4.028 11 N -0.920 5.920 12 Si 1.065 2.935 13 H -0.286 1.286 14 H -0.294 1.294 15 H -0.293 1.293 16 C 0.146 3.854 17 H 0.062 0.938 18 H 0.017 0.983 19 H 0.064 0.936 20 H 0.338 0.662 21 H 0.073 0.927 22 H 0.059 0.941 23 H 0.051 0.949 24 H 0.024 0.976 25 H 0.267 0.733 26 H 0.016 0.984 27 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.404 -7.405 3.815 9.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.315 5.315 3 C -0.039 4.039 4 H 0.066 0.934 5 C -0.178 4.178 6 C 0.021 3.979 7 N -0.331 5.331 8 C -0.461 4.461 9 H 0.082 0.918 10 C -0.229 4.229 11 N -0.561 5.561 12 Si 0.895 3.105 13 H -0.211 1.211 14 H -0.221 1.221 15 H -0.220 1.220 16 C 0.020 3.980 17 H 0.081 0.919 18 H 0.036 0.964 19 H 0.083 0.917 20 H 0.155 0.845 21 H 0.091 0.909 22 H 0.078 0.922 23 H 0.070 0.930 24 H 0.042 0.958 25 H 0.079 0.921 26 H 0.033 0.967 27 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -3.949 -6.584 2.650 8.122 hybrid contribution -1.761 -0.545 1.273 2.240 sum -5.709 -7.128 3.923 9.940 Atomic orbital electron populations 1.22213 0.88370 1.01174 1.00284 1.60380 1.07229 1.14495 1.49440 1.22612 0.95247 0.88021 0.97973 0.93442 1.23017 0.95576 1.00834 0.98327 1.21466 0.97680 0.92940 0.85853 1.44527 1.21473 1.62033 1.05097 1.19770 1.22199 1.18595 0.85538 0.91770 1.25753 1.01859 0.92657 1.02651 1.70777 1.36245 1.35617 1.13466 0.83528 0.76584 0.75881 0.74554 1.21123 1.22122 1.22040 1.21290 0.89021 0.94378 0.93294 0.91872 0.96438 0.91705 0.84501 0.90867 0.92193 0.93019 0.95796 0.92135 0.96651 0.94407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.56 60.06 0.63 1.02 15 2 N -0.68 -10.64 6.68 -112.05 -0.75 -11.39 15 3 C 0.07 1.32 3.27 -65.87 -0.22 1.11 15 4 H 0.05 0.87 7.82 -51.93 -0.41 0.46 15 5 C -0.14 -2.62 6.47 -24.58 -0.16 -2.78 15 6 C 0.15 3.58 5.30 -2.53 -0.01 3.57 15 7 N -0.60 -16.37 3.29 -170.07 -0.56 -16.93 15 8 C -0.33 -9.92 10.02 -15.06 -0.15 -10.07 15 9 H 0.06 1.90 7.97 -52.48 -0.42 1.49 15 10 C -0.03 -0.83 5.09 -17.43 -0.09 -0.92 15 11 N -0.92 -28.68 12.92 55.49 0.72 -27.96 15 12 Si 1.06 26.14 30.00 -169.99 -5.10 21.04 15 13 H -0.29 -7.05 7.11 56.52 0.40 -6.65 15 14 H -0.29 -6.98 7.11 56.52 0.40 -6.58 15 15 H -0.29 -6.86 7.11 56.52 0.40 -6.46 15 16 C 0.15 3.37 7.01 -3.06 -0.02 3.35 15 17 H 0.06 0.68 8.14 -51.93 -0.42 0.26 15 18 H 0.02 0.21 8.08 -51.93 -0.42 -0.21 15 19 H 0.06 0.89 8.14 -51.92 -0.42 0.46 15 20 H 0.34 4.53 8.51 -39.29 -0.33 4.19 15 21 H 0.07 1.36 8.14 -51.93 -0.42 0.94 15 22 H 0.06 0.97 8.14 -51.93 -0.42 0.54 15 23 H 0.05 1.36 7.94 -51.93 -0.41 0.95 15 24 H 0.02 0.62 6.80 -51.93 -0.35 0.27 15 25 H 0.27 8.37 6.06 -40.82 -0.25 8.12 15 26 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 15 27 H 0.04 0.89 8.03 -51.93 -0.42 0.48 15 LS Contribution 223.86 15.07 3.37 3.37 Total: -1.00 -32.14 223.86 -6.25 -38.39 By element: Atomic # 1 Polarization: 2.12 SS G_CDS: -3.92 Total: -1.80 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: -0.01 Total: -4.73 kcal Atomic # 7 Polarization: -55.68 SS G_CDS: -0.59 Total: -56.28 kcal Atomic # 14 Polarization: 26.14 SS G_CDS: -5.10 Total: 21.04 kcal Total LS contribution 3.37 Total: 3.37 kcal Total: -32.14 -6.25 -38.39 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000150195635.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.250 kcal (2) G-P(sol) polarization free energy of solvation -32.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds