Wall clock time and date at job start Mon Mar 30 2020 01:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46897 * 111.00269 * 2 1 4 4 H 1.08998 * 110.64375 * 31.85561 * 3 2 1 5 5 C 1.55156 * 110.72063 * 154.99911 * 3 2 1 6 6 C 1.54910 * 101.58580 * 153.86147 * 5 3 2 7 7 N 1.47426 * 104.83045 * 322.99129 * 6 5 3 8 8 C 1.36933 * 125.64768 * 204.08978 * 7 6 5 9 9 H 1.08003 * 120.00051 * 163.24501 * 8 7 6 10 10 C 1.38816 * 119.99911 * 343.24218 * 8 7 6 11 11 N 1.31614 * 119.99917 * 332.07841 * 10 8 7 12 12 Si 1.86806 * 119.99639 * 151.80517 * 10 8 7 13 13 H 1.48499 * 109.46585 * 180.27661 * 12 10 8 14 14 H 1.48496 * 109.46960 * 300.27614 * 12 10 8 15 15 H 1.48502 * 109.47177 * 60.27500 * 12 10 8 16 16 C 1.47021 * 108.70444 * 24.35239 * 7 6 5 17 17 H 1.08997 * 109.47561 * 180.02562 * 1 2 3 18 18 H 1.08999 * 109.46979 * 300.00850 * 1 2 3 19 19 H 1.09010 * 109.46652 * 59.99858 * 1 2 3 20 20 H 1.00902 * 110.99340 * 123.95150 * 2 1 3 21 21 H 1.08998 * 111.00753 * 35.78724 * 5 3 2 22 22 H 1.09001 * 111.03623 * 271.95236 * 5 3 2 23 23 H 1.08994 * 110.36699 * 204.14877 * 6 5 3 24 24 H 1.08999 * 110.45817 * 81.87179 * 6 5 3 25 25 H 0.96995 * 120.00029 * 353.69197 * 11 10 8 26 26 H 1.08997 * 109.88494 * 118.12737 * 16 7 6 27 27 H 1.08997 * 109.88462 * 239.30065 * 16 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3244 2.0406 0.5383 5 6 3.4201 1.4125 0.6133 6 6 4.0184 2.6656 -0.0733 7 7 3.4779 2.6387 -1.4446 8 6 4.0471 3.2340 -2.5386 9 1 3.7395 2.9439 -3.5324 10 6 5.0194 4.2103 -2.3702 11 7 5.0255 4.9524 -1.2833 12 14 6.3239 4.4654 -3.6828 13 1 7.2414 5.5551 -3.2634 14 1 7.0962 3.2101 -3.8638 15 1 5.6708 4.8340 -4.9646 16 6 2.2232 1.8723 -1.4420 17 1 -0.3634 -1.0276 0.0005 18 1 -0.3633 0.5140 0.8899 19 1 -0.3633 0.5139 -0.8901 20 1 1.8304 -0.5261 0.7814 21 1 3.9840 0.5171 0.3519 22 1 3.3769 1.5426 1.6947 23 1 5.1064 2.6042 -0.0931 24 1 3.6995 3.5714 0.4424 25 1 4.3000 4.8813 -0.6434 26 1 1.3966 2.5132 -1.7486 27 1 2.3067 1.0221 -2.1189 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000150195635.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:26 Heat of formation + Delta-G solvation = -0.870792 kcal Electronic energy + Delta-G solvation = -10095.297624 eV Core-core repulsion = 8273.559795 eV Total energy + Delta-G solvation = -1821.737829 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.68175 -36.35762 -33.89616 -31.00011 -28.95112 -26.71063 -24.98007 -22.16756 -21.36666 -19.61331 -17.29955 -16.58785 -15.88839 -15.67757 -15.13553 -14.76618 -14.59070 -13.80106 -13.26387 -12.85781 -12.59818 -12.52134 -12.18902 -12.04827 -11.87689 -11.66477 -11.59792 -10.55243 -9.46627 -9.04992 -8.36119 -5.37329 1.56747 1.65544 1.85102 2.62498 3.14409 3.15614 3.62309 3.64902 3.98179 4.17914 4.41898 4.50496 4.58279 4.70912 4.87552 4.89187 5.00573 5.03050 5.06423 5.26522 5.63462 6.03557 6.28251 6.49389 6.87989 7.67762 8.26534 8.95204 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.095399 B = 0.012283 C = 0.011605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 293.434359 B = 2279.085755 C = 2412.074197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.690 5.690 3 C 0.089 3.911 4 H 0.055 0.945 5 C -0.120 4.120 6 C 0.146 3.854 7 N -0.627 5.627 8 C -0.353 4.353 9 H 0.057 0.943 10 C -0.078 4.078 11 N -0.943 5.943 12 Si 1.119 2.881 13 H -0.288 1.288 14 H -0.280 1.280 15 H -0.273 1.273 16 C 0.142 3.858 17 H 0.088 0.912 18 H 0.031 0.969 19 H 0.051 0.949 20 H 0.355 0.645 21 H 0.079 0.921 22 H 0.096 0.904 23 H 0.022 0.978 24 H 0.007 0.993 25 H 0.254 0.746 26 H 0.004 0.996 27 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.741 -8.688 4.203 11.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.323 5.323 3 C -0.022 4.022 4 H 0.073 0.927 5 C -0.158 4.158 6 C 0.020 3.980 7 N -0.355 5.355 8 C -0.482 4.482 9 H 0.075 0.925 10 C -0.273 4.273 11 N -0.586 5.586 12 Si 0.943 3.057 13 H -0.213 1.213 14 H -0.206 1.206 15 H -0.199 1.199 16 C 0.016 3.984 17 H 0.107 0.893 18 H 0.049 0.951 19 H 0.070 0.930 20 H 0.174 0.826 21 H 0.097 0.903 22 H 0.115 0.885 23 H 0.040 0.960 24 H 0.024 0.976 25 H 0.064 0.936 26 H 0.022 0.978 27 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -4.321 -7.905 3.053 9.512 hybrid contribution -1.728 -0.178 1.148 2.083 sum -6.050 -8.083 4.202 10.936 Atomic orbital electron populations 1.22283 0.86554 1.02914 1.00297 1.60235 1.08983 1.12428 1.50627 1.22317 0.95382 0.89970 0.94504 0.92712 1.22897 0.95109 0.97894 0.99918 1.21440 0.96154 0.95131 0.85266 1.44834 1.23258 1.61926 1.05478 1.20059 1.22916 1.18809 0.86392 0.92532 1.27274 1.03666 0.92306 1.04096 1.70897 1.36194 1.37145 1.14356 0.82817 0.74023 0.76174 0.72721 1.21350 1.20633 1.19914 1.21417 0.87070 0.93373 0.96542 0.89298 0.95079 0.92997 0.82573 0.90258 0.88508 0.95968 0.97552 0.93570 0.97791 0.95221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 10.56 127.69 1.35 2.00 15 2 N -0.69 -19.32 6.68 -508.41 -3.40 -22.72 15 3 C 0.09 3.12 3.27 46.11 0.15 3.27 15 4 H 0.05 1.87 7.82 -2.39 -0.02 1.85 15 5 C -0.12 -4.27 6.47 31.99 0.21 -4.06 15 6 C 0.15 7.20 5.30 86.86 0.46 7.66 15 7 N -0.63 -34.53 3.29 -691.96 -2.28 -36.80 15 8 C -0.35 -21.42 10.02 84.04 0.84 -20.58 15 9 H 0.06 3.42 7.97 -2.91 -0.02 3.40 15 10 C -0.08 -4.67 5.09 84.86 0.43 -4.23 15 11 N -0.94 -60.02 12.92 21.65 0.28 -59.74 15 12 Si 1.12 52.89 30.00 68.60 2.06 54.95 15 13 H -0.29 -13.61 7.11 99.48 0.71 -12.90 15 14 H -0.28 -12.52 7.11 99.48 0.71 -11.81 15 15 H -0.27 -11.96 7.11 99.48 0.71 -11.25 15 16 C 0.14 6.51 7.01 86.74 0.61 7.12 15 17 H 0.09 1.58 8.14 -2.39 -0.02 1.56 15 18 H 0.03 0.63 8.08 -2.39 -0.02 0.61 15 19 H 0.05 1.31 8.14 -2.38 -0.02 1.29 15 20 H 0.35 8.09 8.51 -89.69 -0.76 7.33 15 21 H 0.08 2.76 8.14 -2.39 -0.02 2.74 15 22 H 0.10 2.78 8.14 -2.39 -0.02 2.76 15 23 H 0.02 1.19 7.94 -2.39 -0.02 1.17 15 24 H 0.01 0.35 6.80 -2.39 -0.02 0.34 15 25 H 0.25 16.42 6.06 -92.71 -0.56 15.85 15 26 H 0.00 0.19 8.14 -2.39 -0.02 0.17 15 27 H 0.03 1.40 8.03 -2.39 -0.02 1.38 15 Total: -1.00 -69.95 223.86 1.30 -68.65 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: 0.58 Total: 4.49 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: 4.05 Total: -8.83 kcal Atomic # 7 Polarization: -113.87 SS G_CDS: -5.39 Total: -119.27 kcal Atomic # 14 Polarization: 52.89 SS G_CDS: 2.06 Total: 54.95 kcal Total: -69.95 1.30 -68.65 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000150195635.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.781 kcal (2) G-P(sol) polarization free energy of solvation -69.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds