Wall clock time and date at job start Mon Mar 30 2020 01:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 119.99943 * 2 1 4 4 H 1.48497 * 109.47017 * 240.00214 * 3 2 1 5 5 H 1.48495 * 109.47115 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46820 * 120.00520 * 3 2 1 7 7 C 1.37871 * 119.99954 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00330 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00119 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.47210 * 179.97438 * 9 7 2 11 11 N 1.45396 * 110.99747 * 174.42696 * 10 9 7 12 12 C 1.48534 * 111.00209 * 358.39172 * 11 10 9 13 13 C 1.54936 * 103.22922 * 159.72234 * 12 11 10 14 14 C 1.54600 * 102.91929 * 322.58556 * 13 12 11 15 15 C 1.47900 * 111.00153 * 115.78889 * 11 10 9 16 16 H 0.97000 * 119.99878 * 359.97438 * 1 2 3 17 17 H 1.09008 * 109.46769 * 60.00146 * 9 7 2 18 18 H 1.08999 * 109.47011 * 300.00462 * 9 7 2 19 19 H 1.00896 * 111.00100 * 50.47417 * 10 9 7 20 20 H 1.09008 * 110.66407 * 278.15338 * 12 11 10 21 21 H 1.08992 * 110.67012 * 41.28647 * 12 11 10 22 22 H 1.08994 * 110.72725 * 204.23001 * 13 12 11 23 23 H 1.09005 * 110.72781 * 80.94108 * 13 12 11 24 24 H 1.09000 * 110.30941 * 263.03852 * 14 13 12 25 25 H 1.09003 * 110.30521 * 140.87418 * 14 13 12 26 26 H 1.09005 * 109.91685 * 333.50400 * 15 11 10 27 27 H 1.08999 * 109.91716 * 94.60065 * 15 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2056 -3.6157 -0.0018 11 7 1.5174 -4.8897 0.1300 12 6 0.0517 -4.6913 0.2665 13 6 -0.5314 -6.0701 -0.1330 14 6 0.4014 -6.5205 -1.2807 15 6 1.7011 -5.7191 -1.0807 16 1 -0.4850 0.8401 0.0004 17 1 0.6240 -2.5566 -0.8904 18 1 0.6247 -2.5570 0.8896 19 1 2.8968 -3.5013 0.7243 20 1 -0.2092 -4.4471 1.2963 21 1 -0.2964 -3.9146 -0.4143 22 1 -1.5569 -5.9672 -0.4874 23 1 -0.4791 -6.7679 0.7028 24 1 -0.0449 -6.2827 -2.2463 25 1 0.6012 -7.5896 -1.2084 26 1 1.8797 -5.0797 -1.9452 27 1 2.5420 -6.3984 -0.9414 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000163600279.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:40 Heat of formation + Delta-G solvation = 29.984579 kcal Electronic energy + Delta-G solvation = -9943.221003 eV Core-core repulsion = 8122.821163 eV Total energy + Delta-G solvation = -1820.399840 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.17125 -33.96029 -32.11323 -28.81223 -28.03016 -25.43532 -22.60100 -20.29575 -19.53819 -16.91177 -15.64131 -15.36956 -14.64487 -13.79655 -13.43919 -12.50232 -12.46132 -11.89639 -11.60422 -11.38657 -10.98939 -10.84570 -10.80660 -10.60307 -10.26447 -10.11666 -9.14198 -8.64644 -8.39350 -7.07394 -6.09517 -4.12780 3.31177 3.34688 3.37903 4.26833 4.50112 4.99734 5.11749 5.26439 5.31200 5.80180 5.90030 6.00524 6.09746 6.19688 6.38358 6.43265 6.50980 6.62033 7.17235 7.20149 7.45978 7.78208 8.11007 8.30390 8.68367 8.95640 9.52343 11.01462 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.096683 B = 0.010920 C = 0.010270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 289.536282 B = 2563.423203 C = 2725.602250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.059 3.941 3 Si 0.903 3.097 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.520 4.520 8 H 0.063 0.937 9 C 0.175 3.825 10 N -0.540 5.540 11 N -0.372 5.372 12 C 0.008 3.992 13 C -0.123 4.123 14 C -0.131 4.131 15 C 0.044 3.956 16 H 0.263 0.737 17 H 0.029 0.971 18 H 0.000 1.000 19 H 0.345 0.655 20 H 0.075 0.925 21 H 0.071 0.929 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.063 0.937 25 H 0.065 0.935 26 H 0.054 0.946 27 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.102 -8.701 -0.797 8.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.143 4.143 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.559 4.559 8 H 0.081 0.919 9 C 0.048 3.952 10 N -0.262 5.262 11 N -0.186 5.186 12 C -0.120 4.120 13 C -0.162 4.162 14 C -0.170 4.170 15 C -0.085 4.085 16 H 0.073 0.927 17 H 0.047 0.953 18 H 0.017 0.983 19 H 0.162 0.838 20 H 0.094 0.906 21 H 0.089 0.911 22 H 0.085 0.915 23 H 0.086 0.914 24 H 0.081 0.919 25 H 0.084 0.916 26 H 0.073 0.927 27 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.014 -8.869 -1.020 8.927 hybrid contribution -0.240 1.459 0.207 1.493 sum -0.226 -7.410 -0.813 7.458 Atomic orbital electron populations 1.69951 1.06131 1.27094 1.50345 1.24979 0.94913 0.99446 0.95011 0.86478 0.79394 0.82326 0.78747 1.20082 1.21256 1.20123 1.21083 0.93543 0.90068 1.51229 0.91861 1.19962 0.91784 0.87464 0.96020 1.63970 1.14756 0.96358 1.51166 1.67933 1.07249 1.09739 1.33680 1.23663 0.89404 0.96911 1.02058 1.22456 0.98430 0.97165 0.98184 1.22420 0.96158 0.99800 0.98649 1.22744 0.96690 0.95643 0.93401 0.92720 0.95345 0.98262 0.83791 0.90646 0.91086 0.91463 0.91376 0.91853 0.91612 0.92724 0.91206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.75 13.29 55.43 0.74 -26.02 15 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 15 3 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 15 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 15 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 7 C -0.52 -14.88 9.26 -34.44 -0.32 -15.20 15 8 H 0.06 1.77 7.81 -52.49 -0.41 1.36 15 9 C 0.18 4.69 4.23 -4.97 -0.02 4.66 15 10 N -0.54 -12.49 6.93 -11.40 -0.08 -12.57 15 11 N -0.37 -7.52 6.19 -110.08 -0.68 -8.20 15 12 C 0.01 0.16 5.20 -1.90 -0.01 0.15 15 13 C -0.12 -1.85 7.06 -24.87 -0.18 -2.03 15 14 C -0.13 -1.88 6.93 -25.37 -0.18 -2.06 15 15 C 0.04 0.77 6.97 -2.76 -0.02 0.75 15 16 H 0.26 7.41 8.31 -40.82 -0.34 7.07 15 17 H 0.03 0.82 6.81 -51.92 -0.35 0.47 15 18 H 0.00 -0.01 6.85 -51.93 -0.36 -0.37 15 19 H 0.34 7.72 8.89 -174.66 -1.55 6.17 15 20 H 0.08 1.49 7.83 -51.92 -0.41 1.08 15 21 H 0.07 1.57 5.65 -51.93 -0.29 1.27 15 22 H 0.07 0.91 8.14 -51.93 -0.42 0.49 15 23 H 0.07 0.94 8.14 -51.93 -0.42 0.52 15 24 H 0.06 0.86 8.14 -51.93 -0.42 0.44 15 25 H 0.07 0.80 8.14 -51.93 -0.42 0.37 15 26 H 0.05 1.03 8.00 -51.93 -0.42 0.62 15 27 H 0.07 1.10 8.14 -51.93 -0.42 0.68 15 LS Contribution 223.25 15.07 3.36 3.36 Total: -1.00 -29.80 223.25 -7.54 -37.34 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -5.04 Total: 1.56 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: -0.82 Total: -12.15 kcal Atomic # 7 Polarization: -46.77 SS G_CDS: -0.02 Total: -46.79 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 3.36 Total: 3.36 kcal Total: -29.80 -7.54 -37.34 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163600279.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.321 kcal (2) G-P(sol) polarization free energy of solvation -29.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds