Wall clock time and date at job start Mon Mar 30 2020 01:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 119.99943 * 2 1 4 4 H 1.48497 * 109.47017 * 240.00214 * 3 2 1 5 5 H 1.48495 * 109.47115 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46820 * 120.00520 * 3 2 1 7 7 C 1.37871 * 119.99954 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00330 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00119 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.47210 * 179.97438 * 9 7 2 11 11 N 1.45396 * 110.99747 * 174.42696 * 10 9 7 12 12 C 1.48534 * 111.00209 * 358.39172 * 11 10 9 13 13 C 1.54936 * 103.22922 * 159.72234 * 12 11 10 14 14 C 1.54600 * 102.91929 * 322.58556 * 13 12 11 15 15 C 1.47900 * 111.00153 * 115.78889 * 11 10 9 16 16 H 0.97000 * 119.99878 * 359.97438 * 1 2 3 17 17 H 1.09008 * 109.46769 * 60.00146 * 9 7 2 18 18 H 1.08999 * 109.47011 * 300.00462 * 9 7 2 19 19 H 1.00896 * 111.00100 * 50.47417 * 10 9 7 20 20 H 1.09008 * 110.66407 * 278.15338 * 12 11 10 21 21 H 1.08992 * 110.67012 * 41.28647 * 12 11 10 22 22 H 1.08994 * 110.72725 * 204.23001 * 13 12 11 23 23 H 1.09005 * 110.72781 * 80.94108 * 13 12 11 24 24 H 1.09000 * 110.30941 * 263.03852 * 14 13 12 25 25 H 1.09003 * 110.30521 * 140.87418 * 14 13 12 26 26 H 1.09005 * 109.91685 * 333.50400 * 15 11 10 27 27 H 1.08999 * 109.91716 * 94.60065 * 15 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2056 -3.6157 -0.0018 11 7 1.5174 -4.8897 0.1300 12 6 0.0517 -4.6913 0.2665 13 6 -0.5314 -6.0701 -0.1330 14 6 0.4014 -6.5205 -1.2807 15 6 1.7011 -5.7191 -1.0807 16 1 -0.4850 0.8401 0.0004 17 1 0.6240 -2.5566 -0.8904 18 1 0.6247 -2.5570 0.8896 19 1 2.8968 -3.5013 0.7243 20 1 -0.2092 -4.4471 1.2963 21 1 -0.2964 -3.9146 -0.4143 22 1 -1.5569 -5.9672 -0.4874 23 1 -0.4791 -6.7679 0.7028 24 1 -0.0449 -6.2827 -2.2463 25 1 0.6012 -7.5896 -1.2084 26 1 1.8797 -5.0797 -1.9452 27 1 2.5420 -6.3984 -0.9414 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000163600279.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:40 Heat of formation + Delta-G solvation = 8.398277 kcal Electronic energy + Delta-G solvation = -9944.157055 eV Core-core repulsion = 8122.821163 eV Total energy + Delta-G solvation = -1821.335892 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.72053 -35.87484 -34.07983 -30.48001 -29.59941 -27.36340 -24.55232 -21.61056 -21.23496 -18.93812 -17.35007 -17.01375 -16.56615 -15.56591 -14.99795 -14.42002 -14.04875 -13.62302 -13.34602 -13.05606 -12.72441 -12.70625 -12.24488 -12.20907 -12.03035 -11.55587 -11.14501 -10.75248 -10.25374 -8.90260 -8.28843 -6.42362 1.39569 1.43552 1.51716 2.34043 2.73963 3.04511 3.58342 3.83290 4.10631 4.32461 4.39090 4.63222 4.79469 4.89623 4.96212 4.98000 5.07751 5.10789 5.14922 5.33898 5.58380 5.84636 5.95981 6.33844 6.75389 6.79796 7.28887 8.82375 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.096683 B = 0.010920 C = 0.010270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 289.536282 B = 2563.423203 C = 2725.602250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.005 3.995 3 Si 0.979 3.021 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.547 4.547 8 H 0.067 0.933 9 C 0.199 3.801 10 N -0.542 5.542 11 N -0.374 5.374 12 C 0.004 3.996 13 C -0.112 4.112 14 C -0.123 4.123 15 C 0.037 3.963 16 H 0.267 0.733 17 H -0.002 1.002 18 H -0.025 1.025 19 H 0.348 0.652 20 H 0.063 0.937 21 H 0.035 0.965 22 H 0.084 0.916 23 H 0.087 0.913 24 H 0.070 0.930 25 H 0.100 0.900 26 H 0.033 0.967 27 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.453 -9.381 -0.919 9.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.194 4.194 3 Si 0.803 3.197 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.586 4.586 8 H 0.085 0.915 9 C 0.070 3.930 10 N -0.264 5.264 11 N -0.188 5.188 12 C -0.125 4.125 13 C -0.151 4.151 14 C -0.162 4.162 15 C -0.091 4.091 16 H 0.076 0.924 17 H 0.016 0.984 18 H -0.007 1.007 19 H 0.166 0.834 20 H 0.082 0.918 21 H 0.054 0.946 22 H 0.103 0.897 23 H 0.106 0.894 24 H 0.088 0.912 25 H 0.118 0.882 26 H 0.052 0.948 27 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.580 -9.571 -1.144 9.657 hybrid contribution -0.430 1.591 0.243 1.666 sum 0.149 -7.980 -0.901 8.032 Atomic orbital electron populations 1.70083 1.07889 1.28352 1.50733 1.25983 0.95844 1.03519 0.94048 0.85293 0.78063 0.77112 0.79277 1.19228 1.20557 1.18917 1.21476 0.93973 0.91255 1.51886 0.91482 1.19522 0.91485 0.88613 0.93369 1.63865 1.14334 0.96860 1.51372 1.67984 1.07523 1.07761 1.35568 1.23646 0.89297 0.98980 1.00595 1.22460 0.99217 0.94250 0.99196 1.22431 0.93938 1.01180 0.98614 1.22927 0.99473 0.95444 0.91267 0.92384 0.98369 1.00746 0.83418 0.91807 0.94642 0.89746 0.89407 0.91151 0.88193 0.94819 0.89176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.59 13.29 21.45 0.28 -56.31 15 2 C 0.01 0.30 5.46 84.65 0.46 0.76 15 3 Si 0.98 44.39 29.54 68.60 2.03 46.42 15 4 H -0.27 -11.73 7.11 99.48 0.71 -11.02 15 5 H -0.28 -12.32 7.11 99.48 0.71 -11.62 15 6 H -0.26 -11.46 7.11 99.48 0.71 -10.75 15 7 C -0.55 -31.88 9.26 25.60 0.24 -31.64 15 8 H 0.07 3.76 7.81 -2.91 -0.02 3.74 15 9 C 0.20 11.04 4.23 85.56 0.36 11.40 15 10 N -0.54 -25.58 6.93 -189.99 -1.32 -26.90 15 11 N -0.37 -15.07 6.19 -502.20 -3.11 -18.18 15 12 C 0.00 0.14 5.20 86.65 0.45 0.59 15 13 C -0.11 -3.12 7.06 31.80 0.22 -2.90 15 14 C -0.12 -3.17 6.93 31.47 0.22 -2.95 15 15 C 0.04 1.25 6.97 86.45 0.60 1.85 15 16 H 0.27 15.19 8.31 -92.71 -0.77 14.42 15 17 H 0.00 -0.10 6.81 -2.38 -0.02 -0.12 15 18 H -0.03 -1.49 6.85 -2.39 -0.02 -1.51 15 19 H 0.35 15.80 8.89 -204.85 -1.82 13.98 15 20 H 0.06 2.59 7.83 -2.38 -0.02 2.57 15 21 H 0.04 1.64 5.65 -2.39 -0.01 1.63 15 22 H 0.08 2.08 8.14 -2.39 -0.02 2.06 15 23 H 0.09 2.13 8.14 -2.38 -0.02 2.11 15 24 H 0.07 1.73 8.14 -2.39 -0.02 1.71 15 25 H 0.10 1.96 8.14 -2.39 -0.02 1.94 15 26 H 0.03 1.26 8.00 -2.38 -0.02 1.24 15 27 H 0.09 2.63 8.14 -2.39 -0.02 2.61 15 Total: -1.00 -64.61 223.25 -0.23 -64.84 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -0.68 Total: 13.01 kcal Atomic # 6 Polarization: -25.45 SS G_CDS: 2.56 Total: -22.89 kcal Atomic # 7 Polarization: -97.24 SS G_CDS: -4.14 Total: -101.38 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -64.61 -0.23 -64.84 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163600279.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.239 kcal (2) G-P(sol) polarization free energy of solvation -64.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds