Wall clock time and date at job start Mon Mar 30 2020 01:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 119.99957 * 2 1 4 4 H 1.48496 * 109.47099 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47195 * 300.00333 * 3 2 1 6 6 H 1.48497 * 109.47114 * 60.00088 * 3 2 1 7 7 C 1.38818 * 119.99973 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99944 * 179.97438 * 7 2 1 9 9 N 1.36927 * 120.00024 * 359.97438 * 7 2 1 10 10 C 1.46502 * 120.00274 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47626 * 185.07028 * 10 9 7 12 12 C 1.52994 * 115.55086 * 65.20168 * 11 10 9 13 13 O 1.42896 * 109.47173 * 65.13750 * 12 11 10 14 14 C 1.52998 * 117.50018 * 210.87438 * 11 10 9 15 15 C 1.53003 * 117.49822 * 279.53247 * 11 10 9 16 16 H 0.96992 * 120.00077 * 359.97438 * 1 2 3 17 17 H 0.97000 * 120.00673 * 0.02562 * 9 7 2 18 18 H 1.08998 * 109.46785 * 65.06601 * 10 9 7 19 19 H 1.08997 * 109.47049 * 305.07333 * 10 9 7 20 20 H 1.09006 * 109.47337 * 305.14108 * 12 11 10 21 21 H 1.08999 * 109.47321 * 185.14043 * 12 11 10 22 22 H 0.96706 * 114.00093 * 179.97438 * 13 12 11 23 23 H 1.09004 * 117.50128 * 215.00071 * 14 11 10 24 24 H 1.09004 * 117.49820 * 0.02562 * 14 11 10 25 25 H 1.09007 * 117.49722 * 359.97398 * 15 11 10 26 26 H 1.08999 * 117.49861 * 144.99159 * 15 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0688 -4.8169 -0.1280 12 6 0.2986 -4.8853 -1.4482 13 8 1.2099 -5.1418 -2.5186 14 6 1.4427 -6.1410 0.5411 15 6 0.3390 -5.2655 1.1397 16 1 -0.4850 0.8400 0.0004 17 1 0.3556 -2.3881 -0.0005 18 1 2.6149 -3.7548 0.9313 19 1 2.7511 -3.6762 -0.8416 20 1 -0.2087 -3.9364 -1.6225 21 1 -0.4379 -5.6873 -1.3980 22 1 0.7898 -5.1987 -3.3877 23 1 1.1400 -7.0610 0.0408 24 1 2.3934 -6.1855 1.0726 25 1 0.5640 -4.7344 2.0646 26 1 -0.6899 -5.6093 1.0331 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000168870669.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:44 Heat of formation + Delta-G solvation = -17.981377 kcal Electronic energy + Delta-G solvation = -9955.279797 eV Core-core repulsion = 8035.081335 eV Total energy + Delta-G solvation = -1920.198462 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.25969 -35.43450 -33.84616 -30.68936 -26.78446 -25.40622 -22.67137 -21.88349 -18.66388 -17.04867 -16.88774 -15.30952 -14.56390 -14.40596 -13.31650 -13.08887 -12.84994 -12.39343 -11.98372 -11.18916 -11.03601 -10.80768 -10.45111 -10.08131 -9.93594 -9.75420 -9.62042 -9.22167 -8.80034 -6.83187 -5.70621 -2.97800 3.47210 3.52679 3.55221 4.02114 4.65867 4.71800 5.16668 5.20840 5.41955 5.63616 5.65856 5.79324 5.94877 6.11179 6.23992 6.46085 6.47435 6.50753 6.87676 6.97659 7.76707 7.99104 8.48869 9.59950 10.19360 10.55371 11.52787 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.066903 B = 0.011710 C = 0.011247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 418.415663 B = 2390.488164 C = 2488.965749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.017 4.017 3 Si 0.907 3.093 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.233 4.233 8 H 0.070 0.930 9 N -0.729 5.729 10 C 0.191 3.809 11 C -0.125 4.125 12 C 0.118 3.882 13 O -0.567 6.567 14 C -0.171 4.171 15 C -0.163 4.163 16 H 0.253 0.747 17 H 0.383 0.617 18 H 0.015 0.985 19 H 0.033 0.967 20 H 0.060 0.940 21 H 0.035 0.965 22 H 0.372 0.628 23 H 0.089 0.911 24 H 0.092 0.908 25 H 0.099 0.901 26 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.056 -10.176 -1.277 10.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.213 4.213 3 Si 0.738 3.262 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.364 4.364 8 H 0.088 0.912 9 N -0.373 5.373 10 C 0.064 3.936 11 C -0.125 4.125 12 C 0.040 3.960 13 O -0.371 6.371 14 C -0.208 4.208 15 C -0.200 4.200 16 H 0.063 0.937 17 H 0.217 0.783 18 H 0.032 0.968 19 H 0.051 0.949 20 H 0.078 0.922 21 H 0.053 0.947 22 H 0.218 0.782 23 H 0.107 0.893 24 H 0.110 0.890 25 H 0.118 0.882 26 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.528 -10.045 -0.779 10.089 hybrid contribution -0.352 0.953 -0.431 1.104 sum 0.176 -9.092 -1.210 9.174 Atomic orbital electron populations 1.69671 1.05088 1.25376 1.58388 1.24727 0.95542 0.97620 1.03400 0.86103 0.78796 0.84147 0.77117 1.20582 1.21936 1.21941 1.19311 0.91099 0.84189 1.41844 0.91173 1.42308 1.05847 0.99803 1.89320 1.20117 0.91983 0.83814 0.97697 1.21625 1.02216 0.96673 0.92019 1.21559 0.89896 0.99005 0.85529 1.86497 1.37636 1.95143 1.17830 1.22927 0.99781 0.94110 1.04015 1.22950 0.96681 1.03156 0.97238 0.93683 0.78345 0.96750 0.94945 0.92212 0.94701 0.78231 0.89277 0.88952 0.88224 0.89258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.95 13.06 55.49 0.72 -28.22 15 2 C -0.02 -0.52 5.50 -17.43 -0.10 -0.61 15 3 Si 0.91 23.01 29.55 -169.99 -5.02 17.98 15 4 H -0.28 -6.91 7.11 56.52 0.40 -6.51 15 5 H -0.29 -7.41 7.11 56.52 0.40 -7.01 15 6 H -0.29 -7.41 7.11 56.52 0.40 -7.00 15 7 C -0.23 -6.81 9.99 -15.06 -0.15 -6.96 15 8 H 0.07 2.00 7.83 -52.49 -0.41 1.59 15 9 N -0.73 -19.47 5.45 -59.91 -0.33 -19.80 15 10 C 0.19 4.29 6.04 -4.04 -0.02 4.26 15 11 C -0.12 -2.28 1.80 -154.51 -0.28 -2.56 15 12 C 0.12 2.00 6.80 37.15 0.25 2.26 15 13 O -0.57 -9.49 13.57 -35.23 -0.48 -9.97 15 14 C -0.17 -2.58 9.94 -26.70 -0.27 -2.84 15 15 C -0.16 -2.60 9.94 -26.69 -0.27 -2.86 15 16 H 0.25 7.53 8.31 -40.82 -0.34 7.20 15 17 H 0.38 10.62 7.34 -40.82 -0.30 10.32 15 18 H 0.01 0.33 8.09 -51.93 -0.42 -0.09 15 19 H 0.03 0.77 8.11 -51.93 -0.42 0.35 15 20 H 0.06 1.13 7.75 -51.93 -0.40 0.73 15 21 H 0.03 0.50 8.09 -51.93 -0.42 0.08 15 22 H 0.37 4.31 9.12 45.56 0.42 4.73 15 23 H 0.09 1.20 8.14 -51.93 -0.42 0.78 15 24 H 0.09 1.34 8.14 -51.93 -0.42 0.91 15 25 H 0.10 1.66 8.14 -51.93 -0.42 1.23 15 26 H 0.09 1.26 8.14 -51.93 -0.42 0.83 15 LS Contribution 230.18 15.07 3.47 3.47 Total: -1.00 -32.48 230.18 -5.25 -37.73 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -2.78 Total: 8.14 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: -0.83 Total: -9.33 kcal Atomic # 7 Polarization: -48.42 SS G_CDS: 0.40 Total: -48.02 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: -0.48 Total: -9.97 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -5.02 Total: 17.98 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -32.48 -5.25 -37.73 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168870669.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.747 kcal (2) G-P(sol) polarization free energy of solvation -32.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds