Wall clock time and date at job start Mon Mar 30 2020 01:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 119.99957 * 2 1 4 4 H 1.48496 * 109.47099 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47195 * 300.00333 * 3 2 1 6 6 H 1.48497 * 109.47114 * 60.00088 * 3 2 1 7 7 C 1.38818 * 119.99973 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99944 * 179.97438 * 7 2 1 9 9 N 1.36927 * 120.00024 * 359.97438 * 7 2 1 10 10 C 1.46502 * 120.00274 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47626 * 185.07028 * 10 9 7 12 12 C 1.52994 * 115.55086 * 65.20168 * 11 10 9 13 13 O 1.42896 * 109.47173 * 65.13750 * 12 11 10 14 14 C 1.52998 * 117.50018 * 210.87438 * 11 10 9 15 15 C 1.53003 * 117.49822 * 279.53247 * 11 10 9 16 16 H 0.96992 * 120.00077 * 359.97438 * 1 2 3 17 17 H 0.97000 * 120.00673 * 0.02562 * 9 7 2 18 18 H 1.08998 * 109.46785 * 65.06601 * 10 9 7 19 19 H 1.08997 * 109.47049 * 305.07333 * 10 9 7 20 20 H 1.09006 * 109.47337 * 305.14108 * 12 11 10 21 21 H 1.08999 * 109.47321 * 185.14043 * 12 11 10 22 22 H 0.96706 * 114.00093 * 179.97438 * 13 12 11 23 23 H 1.09004 * 117.50128 * 215.00071 * 14 11 10 24 24 H 1.09004 * 117.49820 * 0.02562 * 14 11 10 25 25 H 1.09007 * 117.49722 * 359.97398 * 15 11 10 26 26 H 1.08999 * 117.49861 * 144.99159 * 15 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0688 -4.8169 -0.1280 12 6 0.2986 -4.8853 -1.4482 13 8 1.2099 -5.1418 -2.5186 14 6 1.4427 -6.1410 0.5411 15 6 0.3390 -5.2655 1.1397 16 1 -0.4850 0.8400 0.0004 17 1 0.3556 -2.3881 -0.0005 18 1 2.6149 -3.7548 0.9313 19 1 2.7511 -3.6762 -0.8416 20 1 -0.2087 -3.9364 -1.6225 21 1 -0.4379 -5.6873 -1.3980 22 1 0.7898 -5.1987 -3.3877 23 1 1.1400 -7.0610 0.0408 24 1 2.3934 -6.1855 1.0726 25 1 0.5640 -4.7344 2.0646 26 1 -0.6899 -5.6093 1.0331 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168870669.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:44 Heat of formation + Delta-G solvation = -42.874747 kcal Electronic energy + Delta-G solvation = -9956.359255 eV Core-core repulsion = 8035.081335 eV Total energy + Delta-G solvation = -1921.277919 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.64159 -36.78877 -35.83776 -32.80314 -28.34740 -27.15138 -24.65475 -23.17827 -20.21904 -19.08459 -18.19135 -16.87729 -16.38769 -15.98264 -15.10818 -14.93652 -14.36238 -14.08265 -13.50298 -13.08480 -12.81859 -12.35817 -12.17317 -12.00287 -11.74030 -11.30689 -11.07794 -10.85904 -10.61215 -9.00587 -7.96531 -5.25086 1.46035 1.47376 1.57824 2.52998 2.78227 3.35891 3.48783 3.81474 3.91826 4.05089 4.26080 4.38012 4.56828 4.78129 4.83878 4.99857 5.05547 5.17803 5.24149 5.29112 5.46492 6.25862 6.95036 7.32177 8.07242 8.34160 9.27351 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.066903 B = 0.011710 C = 0.011247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 418.415663 B = 2390.488164 C = 2488.965749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.075 4.075 3 Si 0.977 3.023 4 H -0.268 1.268 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.248 4.248 8 H 0.071 0.929 9 N -0.738 5.738 10 C 0.193 3.807 11 C -0.158 4.158 12 C 0.123 3.877 13 O -0.585 6.585 14 C -0.144 4.144 15 C -0.157 4.157 16 H 0.252 0.748 17 H 0.375 0.625 18 H 0.014 0.986 19 H 0.015 0.985 20 H 0.030 0.970 21 H 0.070 0.930 22 H 0.392 0.608 23 H 0.115 0.885 24 H 0.097 0.903 25 H 0.087 0.913 26 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.192 -11.079 -1.219 11.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.267 4.267 3 Si 0.805 3.195 4 H -0.193 1.193 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.380 4.380 8 H 0.089 0.911 9 N -0.380 5.380 10 C 0.066 3.934 11 C -0.158 4.158 12 C 0.046 3.954 13 O -0.392 6.392 14 C -0.181 4.181 15 C -0.194 4.194 16 H 0.061 0.939 17 H 0.207 0.793 18 H 0.031 0.969 19 H 0.033 0.967 20 H 0.048 0.952 21 H 0.088 0.912 22 H 0.241 0.759 23 H 0.133 0.867 24 H 0.115 0.885 25 H 0.105 0.895 26 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 0.796 -10.979 -0.733 11.032 hybrid contribution -0.403 1.180 -0.464 1.330 sum 0.393 -9.799 -1.197 9.880 Atomic orbital electron populations 1.69821 1.06556 1.26080 1.59488 1.25583 0.96503 1.01074 1.03571 0.85029 0.78072 0.79528 0.76855 1.19299 1.21774 1.21676 1.19678 0.91417 0.85521 1.41368 0.91114 1.42462 1.05588 1.00779 1.89183 1.20130 0.92673 0.83971 0.96597 1.21568 1.03222 0.97074 0.93951 1.21467 0.90076 0.98794 0.85071 1.86443 1.38584 1.95032 1.19176 1.23030 0.99689 0.93271 1.02122 1.23011 0.98260 1.02770 0.95358 0.93892 0.79295 0.96856 0.96737 0.95215 0.91162 0.75854 0.86717 0.88465 0.89469 0.86975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.55 13.06 21.65 0.28 -60.27 15 2 C -0.08 -4.46 5.50 84.86 0.47 -4.00 15 3 Si 0.98 47.42 29.55 68.60 2.03 49.45 15 4 H -0.27 -12.36 7.11 99.48 0.71 -11.66 15 5 H -0.29 -13.98 7.11 99.48 0.71 -13.27 15 6 H -0.29 -13.89 7.11 99.48 0.71 -13.18 15 7 C -0.25 -14.64 9.99 84.04 0.84 -13.80 15 8 H 0.07 4.06 7.83 -2.91 -0.02 4.04 15 9 N -0.74 -40.03 5.45 -343.46 -1.87 -41.91 15 10 C 0.19 8.68 6.04 86.38 0.52 9.20 15 11 C -0.16 -5.57 1.80 -52.18 -0.09 -5.66 15 12 C 0.12 4.03 6.80 71.98 0.49 4.52 15 13 O -0.58 -18.78 13.57 -148.98 -2.02 -20.81 15 14 C -0.14 -3.91 9.94 30.62 0.30 -3.61 15 15 C -0.16 -4.66 9.94 30.62 0.30 -4.36 15 16 H 0.25 15.13 8.31 -92.71 -0.77 14.36 15 17 H 0.37 21.26 7.34 -92.71 -0.68 20.58 15 18 H 0.01 0.61 8.09 -2.39 -0.02 0.59 15 19 H 0.01 0.70 8.11 -2.39 -0.02 0.68 15 20 H 0.03 1.13 7.75 -2.38 -0.02 1.11 15 21 H 0.07 1.79 8.09 -2.39 -0.02 1.77 15 22 H 0.39 8.50 9.12 -74.05 -0.68 7.83 15 23 H 0.11 2.58 8.14 -2.38 -0.02 2.56 15 24 H 0.10 2.55 8.14 -2.38 -0.02 2.53 15 25 H 0.09 2.80 8.14 -2.38 -0.02 2.78 15 26 H 0.11 2.81 8.14 -2.39 -0.02 2.79 15 Total: -1.00 -68.78 230.18 1.07 -67.72 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: -0.18 Total: 23.51 kcal Atomic # 6 Polarization: -20.52 SS G_CDS: 2.83 Total: -17.69 kcal Atomic # 7 Polarization: -100.59 SS G_CDS: -1.59 Total: -102.18 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: -2.02 Total: -20.81 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 2.03 Total: 49.45 kcal Total: -68.78 1.07 -67.72 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168870669.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.844 kcal (2) G-P(sol) polarization free energy of solvation -68.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds