Wall clock time and date at job start Mon Mar 30 2020 01:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99774 * 2 1 4 4 H 1.48504 * 109.47209 * 269.99978 * 3 2 1 5 5 H 1.48506 * 109.47294 * 29.99826 * 3 2 1 6 6 H 1.48501 * 109.47275 * 149.99729 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00205 * 359.72747 * 7 2 1 9 9 C 1.50706 * 120.00436 * 180.02562 * 7 2 1 10 10 N 1.46895 * 109.47182 * 179.72677 * 9 7 2 11 11 C 1.47874 * 110.99861 * 192.54121 * 10 9 7 12 12 C 1.54957 * 102.20687 * 222.42388 * 11 10 9 13 13 C 1.52259 * 100.62163 * 22.38594 * 12 11 10 14 14 O 1.20835 * 126.82538 * 155.55908 * 13 12 11 15 15 O 1.29749 * 111.00230 * 69.87285 * 10 9 7 16 16 H 0.96995 * 120.00207 * 0.02562 * 1 2 3 17 17 H 1.09001 * 109.46564 * 299.72974 * 9 7 2 18 18 H 1.08998 * 109.47012 * 59.72028 * 9 7 2 19 19 H 1.09003 * 110.85301 * 340.59652 * 11 10 9 20 20 H 1.08995 * 110.85568 * 104.24156 * 11 10 9 21 21 H 1.09002 * 111.18285 * 264.54633 * 12 11 10 22 22 H 1.08996 * 111.19059 * 140.23376 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 1.4647 -2.1293 0.0054 9 6 3.5117 -1.1939 0.0011 10 7 4.0013 -2.5788 0.0082 11 6 5.4484 -2.6277 0.3088 12 6 5.9578 -3.6844 -0.7037 13 6 4.8565 -3.6213 -1.7532 14 8 4.9491 -3.9244 -2.9192 15 8 3.7638 -3.1619 -1.1263 16 1 -0.4850 0.8400 -0.0004 17 1 3.8752 -0.6845 -0.8913 18 1 3.8746 -0.6756 0.8886 19 1 5.9153 -1.6596 0.1272 20 1 5.6210 -2.9570 1.3334 21 1 6.0113 -4.6730 -0.2477 22 1 6.9204 -3.3945 -1.1248 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000201164655.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:25 Heat of formation + Delta-G solvation = -48.162477 kcal Electronic energy + Delta-G solvation = -9908.087878 eV Core-core repulsion = 7850.747571 eV Total energy + Delta-G solvation = -2057.340307 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 171.068 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -42.95573 -39.33758 -35.47528 -34.28919 -32.74144 -28.92903 -24.51426 -24.36268 -22.33761 -19.00973 -18.50742 -18.13613 -17.68975 -16.28736 -15.67797 -15.12305 -14.68940 -14.52493 -14.36264 -13.54398 -13.32910 -12.64918 -12.51262 -12.36817 -11.83942 -11.61723 -11.35206 -10.83401 -9.55294 -8.30729 -6.37483 0.79172 1.34628 1.37917 1.47322 2.08588 2.32470 2.89434 3.01227 3.16422 3.49850 4.02350 4.45568 4.59262 4.72067 4.77190 4.93234 5.31263 5.50357 6.22676 6.32434 6.68134 7.01496 7.24927 8.86699 Molecular weight = 171.07amu Principal moments of inertia in cm(-1) A = 0.070761 B = 0.013926 C = 0.013148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 395.605316 B = 2010.072924 C = 2129.068504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.005 3.995 3 Si 0.953 3.047 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.231 1.231 7 C -0.528 4.528 8 H 0.032 0.968 9 C 0.137 3.863 10 N -0.340 5.340 11 C -0.011 4.011 12 C -0.167 4.167 13 C 0.439 3.561 14 O -0.498 6.498 15 O -0.178 6.178 16 H 0.269 0.731 17 H 0.005 0.995 18 H 0.080 0.920 19 H 0.088 0.912 20 H 0.146 0.854 21 H 0.151 0.849 22 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.027 -1.833 2.704 15.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.192 4.192 3 Si 0.775 3.225 4 H -0.198 1.198 5 H -0.203 1.203 6 H -0.154 1.154 7 C -0.567 4.567 8 H 0.050 0.950 9 C 0.011 3.989 10 N -0.105 5.105 11 C -0.135 4.135 12 C -0.205 4.205 13 C 0.281 3.719 14 O -0.383 6.383 15 O -0.189 6.189 16 H 0.078 0.922 17 H 0.023 0.977 18 H 0.097 0.903 19 H 0.107 0.893 20 H 0.163 0.837 21 H 0.169 0.831 22 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 14.459 -2.145 2.449 14.821 hybrid contribution -0.017 1.046 -0.762 1.294 sum 14.442 -1.099 1.687 14.581 Atomic orbital electron populations 1.70058 1.08458 1.28431 1.51833 1.25963 0.95765 1.03533 0.93938 0.85649 0.80005 0.77790 0.79083 1.19849 1.20342 1.15398 1.21165 0.90924 0.93587 1.50988 0.94961 1.20932 0.95715 0.84388 0.97830 1.66197 1.17646 1.19241 1.07377 1.24478 0.84793 1.00474 1.03803 1.23522 0.98748 1.04251 0.93943 1.25312 0.85005 0.73392 0.88164 1.90644 1.82006 1.48488 1.17124 1.86815 1.34860 1.66522 1.30670 0.92194 0.97698 0.90256 0.89335 0.83660 0.83090 0.83707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.87 13.96 21.45 0.30 -59.57 14 2 C 0.01 0.32 5.47 84.65 0.46 0.78 14 3 Si 0.95 42.21 27.47 68.60 1.88 44.09 14 4 H -0.27 -11.94 7.11 99.48 0.71 -11.23 14 5 H -0.28 -12.05 7.11 99.48 0.71 -11.35 14 6 H -0.23 -8.80 6.53 99.48 0.65 -8.15 14 7 C -0.53 -31.06 9.66 25.60 0.25 -30.81 14 8 H 0.03 2.18 8.06 -2.91 -0.02 2.15 14 9 C 0.14 6.25 3.79 85.56 0.32 6.58 14 10 N -0.34 -13.51 5.45 -512.00 -2.79 -16.30 14 11 C -0.01 -0.26 7.11 86.79 0.62 0.36 14 12 C -0.17 -3.49 7.26 31.02 0.23 -3.27 14 13 C 0.44 15.78 8.87 71.74 0.64 16.41 14 14 O -0.50 -20.75 18.00 21.49 0.39 -20.36 14 15 O -0.18 -7.85 10.16 81.95 0.83 -7.02 14 16 H 0.27 15.70 8.31 -92.71 -0.77 14.93 14 17 H 0.01 0.24 7.58 -2.39 -0.02 0.22 14 18 H 0.08 3.21 7.09 -2.39 -0.02 3.19 14 19 H 0.09 1.86 7.74 -2.39 -0.02 1.84 14 20 H 0.15 2.55 8.14 -2.39 -0.02 2.53 14 21 H 0.15 2.32 8.14 -2.39 -0.02 2.31 14 22 H 0.14 2.11 8.14 -2.39 -0.02 2.09 14 Total: -1.00 -74.86 201.16 4.28 -70.58 By element: Atomic # 1 Polarization: -2.63 SS G_CDS: 1.16 Total: -1.47 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: 2.51 Total: -9.95 kcal Atomic # 7 Polarization: -73.38 SS G_CDS: -2.49 Total: -75.87 kcal Atomic # 8 Polarization: -28.60 SS G_CDS: 1.22 Total: -27.38 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 1.88 Total: 44.09 kcal Total: -74.86 4.28 -70.58 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000201164655.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.415 kcal (2) G-P(sol) polarization free energy of solvation -74.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds