Wall clock time and date at job start Mon Mar 30 2020 02:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48495 * 109.47216 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 299.99948 * 3 2 1 6 6 H 1.48501 * 109.47057 * 59.99929 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 N 1.46893 * 109.47176 * 180.02562 * 9 7 2 11 11 C 1.46998 * 111.00020 * 302.26729 * 10 9 7 12 12 C 1.53132 * 109.24735 * 181.39457 * 11 10 9 13 13 C 1.53149 * 109.15965 * 301.97244 * 12 11 10 14 14 C 1.53125 * 109.16339 * 57.48474 * 13 12 11 15 15 O 1.42997 * 109.23575 * 302.92601 * 14 13 12 16 16 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 17 17 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 18 18 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 19 19 H 1.09003 * 109.50856 * 301.32933 * 11 10 9 20 20 H 1.09001 * 109.50389 * 61.46443 * 11 10 9 21 21 H 1.09001 * 109.52430 * 182.06359 * 12 11 10 22 22 H 1.09003 * 109.57458 * 61.90732 * 12 11 10 23 23 H 1.08997 * 109.52486 * 297.57712 * 13 12 11 24 24 H 1.09001 * 109.57166 * 177.41895 * 13 12 11 25 25 H 1.09005 * 109.51023 * 182.99910 * 14 13 12 26 26 H 1.09003 * 109.55285 * 62.88010 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2056 -3.6157 -0.0015 11 6 3.1057 -3.5395 -1.1611 12 6 4.0585 -4.7381 -1.1402 13 6 4.8426 -4.7340 0.1753 14 6 3.8579 -4.7688 1.3475 15 8 2.9673 -3.6545 1.2478 16 1 -0.4849 0.8401 0.0004 17 1 0.6240 -2.5575 0.8880 18 1 0.6246 -2.5563 -0.8919 19 1 2.5186 -3.5570 -2.0794 20 1 3.6820 -2.6154 -1.1144 21 1 4.7521 -4.6667 -1.9780 22 1 3.4852 -5.6617 -1.2197 23 1 5.4486 -3.8300 0.2354 24 1 5.4899 -5.6100 0.2173 25 1 4.4080 -4.7124 2.2868 26 1 3.2857 -5.6961 1.3158 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213597833.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:54 Heat of formation + Delta-G solvation = -30.570278 kcal Electronic energy + Delta-G solvation = -10262.204422 eV Core-core repulsion = 8341.460064 eV Total energy + Delta-G solvation = -1920.744357 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.36553 -35.74709 -34.21749 -33.64983 -29.33812 -26.85814 -25.01803 -23.43966 -20.93382 -18.68473 -17.23962 -17.14851 -16.29988 -15.67103 -15.18639 -14.89856 -14.38532 -13.80171 -13.53498 -13.19801 -12.93311 -12.70240 -12.29688 -12.01426 -11.81975 -11.61736 -11.39780 -10.76827 -10.65205 -9.29545 -8.22906 -6.39749 1.34433 1.35697 1.48269 2.09669 2.35354 3.05180 3.87154 4.00762 4.06733 4.19482 4.56004 4.62374 4.81740 4.93490 5.02431 5.04408 5.11594 5.20112 5.35041 5.39499 5.64557 5.77976 6.05417 6.48435 6.74099 7.29669 8.83006 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.066780 B = 0.013681 C = 0.013132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.189237 B = 2046.186325 C = 2131.718844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.009 3.991 3 Si 0.965 3.035 4 H -0.271 1.271 5 H -0.271 1.271 6 H -0.277 1.277 7 C -0.554 4.554 8 H 0.052 0.948 9 C 0.184 3.816 10 N -0.348 5.348 11 C 0.015 3.985 12 C -0.111 4.111 13 C -0.148 4.148 14 C 0.047 3.953 15 O -0.289 6.289 16 H 0.268 0.732 17 H 0.010 0.990 18 H 0.042 0.958 19 H 0.084 0.916 20 H 0.031 0.969 21 H 0.090 0.910 22 H 0.076 0.924 23 H 0.053 0.947 24 H 0.104 0.896 25 H 0.106 0.894 26 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.719 -7.453 -1.583 11.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.190 4.190 3 Si 0.789 3.211 4 H -0.195 1.195 5 H -0.196 1.196 6 H -0.202 1.202 7 C -0.593 4.593 8 H 0.070 0.930 9 C 0.057 3.943 10 N -0.117 5.117 11 C -0.114 4.114 12 C -0.149 4.149 13 C -0.186 4.186 14 C -0.030 4.030 15 O -0.293 6.293 16 H 0.077 0.923 17 H 0.028 0.972 18 H 0.059 0.941 19 H 0.103 0.897 20 H 0.050 0.950 21 H 0.108 0.892 22 H 0.095 0.905 23 H 0.072 0.928 24 H 0.122 0.878 25 H 0.124 0.876 26 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.294 -7.652 -1.430 11.375 hybrid contribution 0.474 1.683 -0.011 1.748 sum 8.768 -5.969 -1.441 10.705 Atomic orbital electron populations 1.70058 1.07488 1.28108 1.50887 1.25862 0.95783 1.03060 0.94309 0.85405 0.78614 0.78889 0.78144 1.19547 1.19588 1.20220 1.21847 0.93151 0.92695 1.51567 0.92955 1.19762 0.90725 0.87108 0.96690 1.68838 1.08406 1.42426 0.91982 1.22702 0.96429 0.98584 0.93655 1.21625 0.97524 0.97285 0.98459 1.22113 0.98268 1.03151 0.95078 1.22801 0.90886 0.90026 0.99295 1.90928 1.58847 1.48459 1.31024 0.92322 0.97166 0.94073 0.89747 0.95016 0.89164 0.90498 0.92833 0.87796 0.87647 0.92483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.19 13.29 21.45 0.28 -55.91 15 2 C 0.01 0.54 5.46 84.65 0.46 1.00 15 3 Si 0.96 45.24 29.54 68.60 2.03 47.27 15 4 H -0.27 -12.46 7.11 99.48 0.71 -11.75 15 5 H -0.27 -12.08 7.11 99.48 0.71 -11.38 15 6 H -0.28 -12.65 7.11 99.48 0.71 -11.94 15 7 C -0.55 -32.58 8.17 25.60 0.21 -32.37 15 8 H 0.05 3.10 6.51 -2.91 -0.02 3.08 15 9 C 0.18 10.32 5.47 85.56 0.47 10.79 15 10 N -0.35 -16.47 5.43 -517.46 -2.81 -19.28 15 11 C 0.02 0.61 5.39 86.33 0.47 1.07 15 12 C -0.11 -3.23 6.11 30.69 0.19 -3.04 15 13 C -0.15 -4.09 6.13 30.69 0.19 -3.90 15 14 C 0.05 1.55 7.10 72.02 0.51 2.06 15 15 O -0.29 -13.48 10.87 -50.35 -0.55 -14.02 15 16 H 0.27 15.13 8.31 -92.71 -0.77 14.36 15 17 H 0.01 0.62 8.14 -2.39 -0.02 0.60 15 18 H 0.04 2.37 8.14 -2.39 -0.02 2.35 15 19 H 0.08 3.24 8.14 -2.39 -0.02 3.23 15 20 H 0.03 1.42 6.39 -2.39 -0.02 1.40 15 21 H 0.09 2.13 8.14 -2.39 -0.02 2.11 15 22 H 0.08 2.07 8.14 -2.39 -0.02 2.05 15 23 H 0.05 1.59 8.14 -2.39 -0.02 1.57 15 24 H 0.10 2.07 8.14 -2.39 -0.02 2.05 15 25 H 0.11 2.91 8.14 -2.38 -0.02 2.90 15 26 H 0.06 1.73 8.14 -2.39 -0.02 1.71 15 Total: -1.00 -66.57 218.76 2.59 -63.98 By element: Atomic # 1 Polarization: 1.21 SS G_CDS: 1.14 Total: 2.35 kcal Atomic # 6 Polarization: -26.88 SS G_CDS: 2.49 Total: -24.39 kcal Atomic # 7 Polarization: -72.66 SS G_CDS: -2.52 Total: -75.19 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: -0.55 Total: -14.02 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -66.57 2.59 -63.98 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213597833.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.410 kcal (2) G-P(sol) polarization free energy of solvation -66.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds