Wall clock time and date at job start Mon Mar 30 2020 01:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31065 * 1 3 3 Si 1.86796 * 120.00185 * 2 1 4 4 H 1.48499 * 109.47080 * 269.99499 * 3 2 1 5 5 H 1.48500 * 109.47370 * 29.99381 * 3 2 1 6 6 H 1.48506 * 109.47073 * 149.99859 * 3 2 1 7 7 C 1.39658 * 119.99704 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00246 * 180.02562 * 7 2 1 9 9 C 1.41334 * 120.00178 * 0.02562 * 7 2 1 10 10 C 1.39298 * 127.08162 * 359.95088 * 9 7 2 11 11 N 1.35542 * 107.85839 * 180.02562 * 10 9 7 12 12 H 0.96996 * 124.85005 * 179.97438 * 11 10 9 13 13 C 1.36684 * 110.30308 * 359.74022 * 11 10 9 14 14 Cl 1.73603 * 125.29618 * 180.28300 * 13 11 10 15 15 C 1.34451 * 109.41206 * 0.44440 * 13 11 10 16 16 H 0.96997 * 119.99365 * 0.02562 * 1 2 3 17 17 H 1.07994 * 126.06917 * 0.05888 * 10 9 7 18 18 H 1.08002 * 126.70895 * 179.84236 * 15 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3107 0.0000 0.0000 3 14 2.2447 1.6177 0.0000 4 1 2.4923 2.0463 -1.4001 5 1 1.4421 2.6527 0.6999 6 1 3.5423 1.4400 0.7001 7 6 2.0089 -1.2095 0.0005 8 1 3.0889 -1.2096 0.0010 9 6 1.3022 -2.4335 0.0005 10 6 -0.0802 -2.6052 0.0010 11 7 -0.3336 -3.9367 0.0014 12 1 -1.2192 -4.3323 0.0021 13 6 0.8370 -4.6423 -0.0046 14 17 0.9645 -6.3736 -0.0133 15 6 1.8743 -3.7870 0.0008 16 1 -0.4849 0.8401 -0.0004 17 1 -0.8187 -1.8173 0.0005 18 1 2.9232 -4.0444 0.0005 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213600347.mol2 18 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:30 Heat of formation + Delta-G solvation = 6.860044 kcal Electronic energy + Delta-G solvation = -7657.764623 eV Core-core repulsion = 5907.686342 eV Total energy + Delta-G solvation = -1750.078281 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 171.015 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -40.83663 -37.36559 -35.29774 -31.57362 -29.22823 -26.68855 -21.48542 -20.90529 -19.29706 -17.78499 -16.35433 -14.91159 -14.73057 -14.40574 -14.18715 -13.12535 -12.91860 -12.70051 -12.40035 -12.15271 -11.65644 -11.55448 -11.14792 -9.36677 -8.60370 -8.34629 -6.04721 1.05593 1.41798 1.46224 1.59318 1.66988 2.31996 2.35784 3.15649 3.59306 4.93195 5.09710 5.29316 5.40231 5.89389 6.03931 6.31353 6.78986 7.15627 7.24799 7.29849 8.65705 Molecular weight = 171.01amu Principal moments of inertia in cm(-1) A = 0.135045 B = 0.012096 C = 0.011145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 207.289283 B = 2314.291140 C = 2511.732038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.013 3.987 3 Si 0.988 3.012 4 H -0.269 1.269 5 H -0.272 1.272 6 H -0.265 1.265 7 C -0.467 4.467 8 H 0.064 0.936 9 C -0.022 4.022 10 C -0.110 4.110 11 N -0.557 5.557 12 H 0.411 0.589 13 C 0.050 3.950 14 Cl -0.038 7.038 15 C -0.253 4.253 16 H 0.278 0.722 17 H 0.183 0.817 18 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.512 -4.255 -0.012 4.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.194 4.194 3 Si 0.811 3.189 4 H -0.194 1.194 5 H -0.197 1.197 6 H -0.189 1.189 7 C -0.500 4.500 8 H 0.083 0.917 9 C -0.028 4.028 10 C -0.238 4.238 11 N -0.159 5.159 12 H 0.248 0.752 13 C -0.088 4.088 14 Cl -0.010 7.010 15 C -0.283 4.283 16 H 0.088 0.912 17 H 0.200 0.800 18 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.805 -4.270 -0.005 4.345 hybrid contribution -0.068 0.247 -0.012 0.256 sum -0.873 -4.023 -0.017 4.117 Atomic orbital electron populations 1.69535 1.08234 1.28817 1.43075 1.26489 0.95796 1.03741 0.93345 0.85088 0.78548 0.76421 0.78841 1.19383 1.19684 1.18891 1.19039 0.93863 0.90468 1.46680 0.91723 1.18781 0.91936 0.91442 1.00636 1.23281 0.98300 0.82061 1.20135 1.41494 1.06202 1.06056 1.62102 0.75228 1.20456 0.88236 0.82744 1.17320 1.98276 1.97683 1.07201 1.97849 1.21743 0.96616 0.92223 1.17752 0.91184 0.80035 0.85369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -46.54 10.38 21.79 0.23 -46.31 13 2 C 0.01 0.68 5.49 85.15 0.47 1.14 13 3 Si 0.99 40.92 29.56 68.60 2.03 42.95 13 4 H -0.27 -10.77 7.11 99.48 0.71 -10.07 13 5 H -0.27 -10.72 7.11 99.48 0.71 -10.01 13 6 H -0.26 -10.74 7.11 99.48 0.71 -10.03 13 7 C -0.47 -26.65 9.44 23.37 0.22 -26.42 13 8 H 0.06 3.58 7.84 -2.91 -0.02 3.56 13 9 C -0.02 -1.26 6.12 -19.98 -0.12 -1.38 13 10 C -0.11 -5.73 10.96 84.38 0.92 -4.81 13 11 N -0.56 -24.23 5.95 -183.00 -1.09 -25.32 13 12 H 0.41 14.52 8.96 -92.71 -0.83 13.68 13 13 C 0.05 2.20 7.71 83.07 0.64 2.84 13 14 Cl -0.04 -1.29 29.29 -2.72 -0.08 -1.37 13 15 C -0.25 -12.59 11.04 23.69 0.26 -12.33 13 16 H 0.28 13.67 8.30 -92.71 -0.77 12.90 13 17 H 0.18 9.84 5.78 -2.91 -0.02 9.83 13 18 H 0.13 5.95 8.06 -2.91 -0.02 5.93 13 Total: -1.00 -59.15 186.20 3.94 -55.22 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: 0.46 Total: 15.79 kcal Atomic # 6 Polarization: -43.35 SS G_CDS: 2.39 Total: -40.95 kcal Atomic # 7 Polarization: -70.77 SS G_CDS: -0.86 Total: -71.63 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 2.03 Total: 42.95 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -0.08 Total: -1.37 kcal Total: -59.15 3.94 -55.22 kcal The number of atoms in the molecule is 18 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213600347.mol2 18 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.077 kcal (2) G-P(sol) polarization free energy of solvation -59.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds