Wall clock time and date at job start Mon Mar 30 2020 02:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99920 * 2 1 4 4 H 1.48493 * 109.47326 * 269.99738 * 3 2 1 5 5 H 1.48497 * 109.47003 * 29.99911 * 3 2 1 6 6 H 1.48505 * 109.46995 * 149.99641 * 3 2 1 7 7 C 1.37875 * 119.99781 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00008 * 359.97438 * 7 2 1 9 9 C 1.50694 * 119.99970 * 180.02562 * 7 2 1 10 10 H 1.08997 * 110.78850 * 56.74729 * 9 7 2 11 11 C 1.54943 * 110.72371 * 293.49670 * 9 7 2 12 12 N 1.48529 * 103.23110 * 204.22527 * 11 9 7 13 13 C 1.47906 * 105.81645 * 39.20833 * 12 11 9 14 14 C 1.53997 * 107.05871 * 334.66750 * 13 12 11 15 15 H 1.09005 * 110.30580 * 120.14185 * 14 13 12 16 16 C 1.53004 * 110.30778 * 242.30679 * 14 13 12 17 17 O 1.42897 * 109.47046 * 293.54462 * 16 14 13 18 18 H 0.96998 * 119.99886 * 0.02562 * 1 2 3 19 19 H 1.08995 * 110.66363 * 322.66634 * 11 9 7 20 20 H 1.09004 * 110.66081 * 85.62536 * 11 9 7 21 21 H 1.00899 * 111.00512 * 278.69987 * 12 11 9 22 22 H 1.08998 * 109.91583 * 215.31824 * 13 12 11 23 23 H 1.09004 * 109.91554 * 94.02407 * 13 12 11 24 24 H 1.08998 * 109.46452 * 53.54971 * 16 14 13 25 25 H 1.09005 * 109.46459 * 173.54559 * 16 14 13 26 26 H 0.96701 * 113.99531 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 1 3.8980 -0.6352 0.8533 11 6 4.0603 -0.6166 -1.3278 12 7 5.4138 -1.2200 -1.4274 13 6 5.2712 -2.6117 -0.9471 14 6 4.0586 -2.6400 0.0017 15 1 3.3024 -3.3308 -0.3714 16 6 4.4968 -3.0415 1.4116 17 8 4.9515 -4.3961 1.4014 18 1 -0.4850 0.8400 -0.0004 19 1 3.4383 -0.9262 -2.1676 20 1 4.1236 0.4704 -1.2777 21 1 6.0793 -0.7102 -0.8659 22 1 6.1703 -2.9130 -0.4096 23 1 5.0982 -3.2798 -1.7908 24 1 5.3057 -2.3890 1.7402 25 1 3.6530 -2.9465 2.0951 26 1 5.2453 -4.7188 2.2644 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000215148789.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:13 Heat of formation + Delta-G solvation = -54.347315 kcal Electronic energy + Delta-G solvation = -10283.751276 eV Core-core repulsion = 8361.975869 eV Total energy + Delta-G solvation = -1921.775407 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.37062 -35.90083 -32.65963 -30.29089 -28.90774 -24.76966 -23.40511 -20.78618 -18.97463 -17.05918 -16.85119 -15.63566 -14.93915 -13.99110 -13.55354 -13.14494 -12.78008 -12.67628 -11.77124 -11.54152 -10.94646 -10.66429 -10.46644 -10.18841 -9.80747 -9.70036 -9.45774 -9.20151 -8.66746 -7.91358 -6.13140 -4.12599 3.23551 3.30885 3.32582 4.34986 4.64941 5.01362 5.18185 5.42279 5.71592 5.74351 5.88004 6.16580 6.29964 6.34772 6.49889 6.70773 6.74398 6.97049 7.24493 7.40763 7.71742 7.95015 7.96724 8.46306 8.90407 9.48065 10.99910 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.053090 B = 0.017400 C = 0.014772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.282026 B = 1608.789543 C = 1894.981780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.072 3.928 3 Si 0.878 3.122 4 H -0.274 1.274 5 H -0.291 1.291 6 H -0.268 1.268 7 C -0.509 4.509 8 H 0.075 0.925 9 C -0.008 4.008 10 H 0.033 0.967 11 C 0.035 3.965 12 N -0.685 5.685 13 C 0.053 3.947 14 C -0.105 4.105 15 H 0.081 0.919 16 C 0.087 3.913 17 O -0.577 6.577 18 H 0.265 0.735 19 H 0.082 0.918 20 H 0.053 0.947 21 H 0.323 0.677 22 H 0.057 0.943 23 H 0.067 0.933 24 H 0.034 0.966 25 H 0.050 0.950 26 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.405 -2.213 2.261 9.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.130 4.130 3 Si 0.706 3.294 4 H -0.200 1.200 5 H -0.218 1.218 6 H -0.193 1.193 7 C -0.547 4.547 8 H 0.093 0.907 9 C -0.028 4.028 10 H 0.051 0.949 11 C -0.094 4.094 12 N -0.311 5.311 13 C -0.077 4.077 14 C -0.124 4.124 15 H 0.100 0.900 16 C 0.010 3.990 17 O -0.382 6.382 18 H 0.074 0.926 19 H 0.101 0.899 20 H 0.072 0.928 21 H 0.137 0.863 22 H 0.075 0.925 23 H 0.086 0.914 24 H 0.052 0.948 25 H 0.069 0.931 26 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 9.081 -2.177 0.870 9.379 hybrid contribution 0.294 1.081 1.635 1.982 sum 9.375 -1.096 2.504 9.765 Atomic orbital electron populations 1.69895 1.06237 1.27004 1.50493 1.25007 0.94699 0.98952 0.94387 0.86928 0.79975 0.83854 0.78602 1.20012 1.21769 1.19261 1.20940 0.88071 0.94581 1.51093 0.90676 1.20639 0.97621 0.90663 0.93916 0.94948 1.23606 0.88339 0.97259 1.00162 1.62875 1.09329 1.03271 1.55598 1.22686 0.97102 0.90943 0.97003 1.22373 0.97602 0.99528 0.92947 0.90018 1.22304 0.96894 0.81279 0.98552 1.86499 1.86505 1.29587 1.35576 0.92556 0.89948 0.92829 0.86296 0.92464 0.91417 0.94755 0.93129 0.78548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.21 13.96 55.43 0.77 -26.44 15 2 C 0.07 2.04 5.46 -17.82 -0.10 1.94 15 3 Si 0.88 21.33 24.78 -169.99 -4.21 17.12 15 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 15 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 15 6 H -0.27 -6.19 6.45 56.52 0.36 -5.83 15 7 C -0.51 -14.11 9.06 -34.44 -0.31 -14.42 15 8 H 0.08 2.28 7.79 -52.49 -0.41 1.87 15 9 C -0.01 -0.19 1.98 -89.91 -0.18 -0.37 15 10 H 0.03 0.76 6.75 -51.93 -0.35 0.41 15 11 C 0.04 0.77 6.01 -1.90 -0.01 0.76 15 12 N -0.69 -13.02 7.51 -110.08 -0.83 -13.85 15 13 C 0.05 0.97 7.04 -2.75 -0.02 0.95 15 14 C -0.10 -2.14 2.85 -89.26 -0.25 -2.40 15 15 H 0.08 1.83 7.67 -51.93 -0.40 1.43 15 16 C 0.09 1.54 6.11 37.16 0.23 1.77 15 17 O -0.58 -9.20 13.41 -35.23 -0.47 -9.68 15 18 H 0.26 7.51 8.31 -40.82 -0.34 7.17 15 19 H 0.08 1.91 8.04 -51.93 -0.42 1.50 15 20 H 0.05 1.17 5.44 -51.93 -0.28 0.88 15 21 H 0.32 5.51 8.92 -39.29 -0.35 5.16 15 22 H 0.06 0.96 7.60 -51.93 -0.39 0.57 15 23 H 0.07 1.25 8.14 -51.93 -0.42 0.83 15 24 H 0.03 0.55 8.14 -51.93 -0.42 0.13 15 25 H 0.05 0.93 8.14 -51.93 -0.42 0.50 15 26 H 0.37 3.92 9.12 45.56 0.42 4.34 15 LS Contribution 212.89 15.07 3.21 3.21 Total: -1.00 -30.45 212.89 -4.80 -35.25 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -2.63 Total: 6.16 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: -0.65 Total: -11.77 kcal Atomic # 7 Polarization: -40.24 SS G_CDS: -0.05 Total: -40.29 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: -0.47 Total: -9.68 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.21 Total: 17.12 kcal Total LS contribution 3.21 Total: 3.21 kcal Total: -30.45 -4.80 -35.25 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215148789.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.094 kcal (2) G-P(sol) polarization free energy of solvation -30.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds