Wall clock time and date at job start Mon Mar 30 2020 02:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99920 * 2 1 4 4 H 1.48493 * 109.47326 * 269.99738 * 3 2 1 5 5 H 1.48497 * 109.47003 * 29.99911 * 3 2 1 6 6 H 1.48505 * 109.46995 * 149.99641 * 3 2 1 7 7 C 1.37875 * 119.99781 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00008 * 359.97438 * 7 2 1 9 9 C 1.50694 * 119.99970 * 180.02562 * 7 2 1 10 10 H 1.08997 * 110.78850 * 56.74729 * 9 7 2 11 11 C 1.54943 * 110.72371 * 293.49670 * 9 7 2 12 12 N 1.48529 * 103.23110 * 204.22527 * 11 9 7 13 13 C 1.47906 * 105.81645 * 39.20833 * 12 11 9 14 14 C 1.53997 * 107.05871 * 334.66750 * 13 12 11 15 15 H 1.09005 * 110.30580 * 120.14185 * 14 13 12 16 16 C 1.53004 * 110.30778 * 242.30679 * 14 13 12 17 17 O 1.42897 * 109.47046 * 293.54462 * 16 14 13 18 18 H 0.96998 * 119.99886 * 0.02562 * 1 2 3 19 19 H 1.08995 * 110.66363 * 322.66634 * 11 9 7 20 20 H 1.09004 * 110.66081 * 85.62536 * 11 9 7 21 21 H 1.00899 * 111.00512 * 278.69987 * 12 11 9 22 22 H 1.08998 * 109.91583 * 215.31824 * 13 12 11 23 23 H 1.09004 * 109.91554 * 94.02407 * 13 12 11 24 24 H 1.08998 * 109.46452 * 53.54971 * 16 14 13 25 25 H 1.09005 * 109.46459 * 173.54559 * 16 14 13 26 26 H 0.96701 * 113.99531 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 1 3.8980 -0.6352 0.8533 11 6 4.0603 -0.6166 -1.3278 12 7 5.4138 -1.2200 -1.4274 13 6 5.2712 -2.6117 -0.9471 14 6 4.0586 -2.6400 0.0017 15 1 3.3024 -3.3308 -0.3714 16 6 4.4968 -3.0415 1.4116 17 8 4.9515 -4.3961 1.4014 18 1 -0.4850 0.8400 -0.0004 19 1 3.4383 -0.9262 -2.1676 20 1 4.1236 0.4704 -1.2777 21 1 6.0793 -0.7102 -0.8659 22 1 6.1703 -2.9130 -0.4096 23 1 5.0982 -3.2798 -1.7908 24 1 5.3057 -2.3890 1.7402 25 1 3.6530 -2.9465 2.0951 26 1 5.2453 -4.7188 2.2644 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000215148789.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:13 Heat of formation + Delta-G solvation = -81.001672 kcal Electronic energy + Delta-G solvation = -10284.907096 eV Core-core repulsion = 8361.975869 eV Total energy + Delta-G solvation = -1922.931227 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.98321 -37.25281 -34.76880 -31.94921 -30.68646 -26.49898 -25.14708 -22.50648 -20.65716 -19.08486 -18.21801 -17.23567 -16.69454 -15.72032 -15.03992 -14.81220 -14.80323 -14.35209 -13.46000 -13.08414 -12.76210 -12.47474 -12.15339 -11.89087 -11.58134 -11.43044 -11.23053 -10.88366 -10.77568 -9.51519 -8.32199 -6.37016 1.32839 1.34482 1.44376 2.31129 3.01519 3.35515 3.45888 3.93492 4.11886 4.25128 4.43393 4.60077 4.69262 4.72081 4.83534 4.99894 5.17364 5.26265 5.50321 5.54669 5.85114 6.27012 6.55104 6.68243 6.94165 7.27242 8.84734 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.053090 B = 0.017400 C = 0.014772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.282026 B = 1608.789543 C = 1894.981780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.012 3.988 3 Si 0.944 3.056 4 H -0.263 1.263 5 H -0.291 1.291 6 H -0.241 1.241 7 C -0.515 4.515 8 H 0.027 0.973 9 C -0.009 4.009 10 H 0.041 0.959 11 C 0.041 3.959 12 N -0.676 5.676 13 C 0.060 3.940 14 C -0.108 4.108 15 H 0.048 0.952 16 C 0.096 3.904 17 O -0.586 6.586 18 H 0.267 0.733 19 H 0.060 0.940 20 H 0.061 0.939 21 H 0.342 0.658 22 H 0.085 0.915 23 H 0.064 0.936 24 H 0.061 0.939 25 H 0.035 0.965 26 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.123 -1.381 2.667 12.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.185 4.185 3 Si 0.768 3.232 4 H -0.188 1.188 5 H -0.218 1.218 6 H -0.164 1.164 7 C -0.553 4.553 8 H 0.045 0.955 9 C -0.030 4.030 10 H 0.059 0.941 11 C -0.089 4.089 12 N -0.303 5.303 13 C -0.069 4.069 14 C -0.128 4.128 15 H 0.066 0.934 16 C 0.018 3.982 17 O -0.394 6.394 18 H 0.076 0.924 19 H 0.079 0.921 20 H 0.080 0.920 21 H 0.157 0.843 22 H 0.103 0.897 23 H 0.082 0.918 24 H 0.079 0.921 25 H 0.053 0.947 26 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 11.840 -1.374 1.296 11.990 hybrid contribution -0.599 0.679 1.523 1.772 sum 11.241 -0.695 2.818 11.609 Atomic orbital electron populations 1.70057 1.08350 1.28192 1.52348 1.25930 0.95471 1.03160 0.93936 0.85864 0.79499 0.78435 0.79397 1.18829 1.21788 1.16441 1.21172 0.90808 0.92829 1.50496 0.95456 1.20579 0.94420 0.92964 0.95021 0.94077 1.23353 0.89589 0.97670 0.98250 1.62783 1.07878 1.03435 1.56212 1.22643 0.97052 0.90658 0.96581 1.22296 0.97746 0.97181 0.95582 0.93368 1.22061 0.97323 0.82739 0.96027 1.86433 1.86464 1.28590 1.37927 0.92423 0.92130 0.92046 0.84281 0.89692 0.91753 0.92072 0.94665 0.75581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.25 13.96 21.45 0.30 -58.95 15 2 C 0.01 0.71 5.46 84.65 0.46 1.17 15 3 Si 0.94 43.15 24.78 68.60 1.70 44.85 15 4 H -0.26 -11.53 7.11 99.48 0.71 -10.82 15 5 H -0.29 -13.27 7.11 99.48 0.71 -12.56 15 6 H -0.24 -9.92 6.45 99.48 0.64 -9.28 15 7 C -0.51 -29.31 9.06 25.60 0.23 -29.08 15 8 H 0.03 1.75 7.79 -2.91 -0.02 1.73 15 9 C -0.01 -0.43 1.98 -10.34 -0.02 -0.45 15 10 H 0.04 1.81 6.75 -2.39 -0.02 1.79 15 11 C 0.04 1.71 6.01 86.65 0.52 2.23 15 12 N -0.68 -23.41 7.51 -502.18 -3.77 -27.19 15 13 C 0.06 2.06 7.04 86.45 0.61 2.67 15 14 C -0.11 -4.31 2.85 -9.91 -0.03 -4.34 15 15 H 0.05 2.22 7.67 -2.38 -0.02 2.20 15 16 C 0.10 3.18 6.11 71.98 0.44 3.62 15 17 O -0.59 -17.10 13.41 -148.98 -2.00 -19.10 15 18 H 0.27 15.54 8.31 -92.71 -0.77 14.77 15 19 H 0.06 2.78 8.04 -2.39 -0.02 2.76 15 20 H 0.06 2.46 5.44 -2.39 -0.01 2.45 15 21 H 0.34 10.02 8.92 -89.69 -0.80 9.22 15 22 H 0.08 2.47 7.60 -2.39 -0.02 2.45 15 23 H 0.06 2.25 8.14 -2.38 -0.02 2.23 15 24 H 0.06 1.72 8.14 -2.39 -0.02 1.70 15 25 H 0.04 1.26 8.14 -2.38 -0.02 1.24 15 26 H 0.39 7.09 9.12 -74.06 -0.68 6.41 15 Total: -1.00 -66.36 212.89 -1.91 -68.27 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: -0.36 Total: 16.29 kcal Atomic # 6 Polarization: -26.39 SS G_CDS: 2.21 Total: -24.18 kcal Atomic # 7 Polarization: -82.67 SS G_CDS: -3.47 Total: -86.14 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -2.00 Total: -19.10 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 1.70 Total: 44.85 kcal Total: -66.36 -1.91 -68.27 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215148789.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.727 kcal (2) G-P(sol) polarization free energy of solvation -66.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds