Wall clock time and date at job start Mon Mar 30 2020 02:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86789 * 120.00192 * 2 1 4 4 H 1.48506 * 109.47200 * 269.99683 * 3 2 1 5 5 H 1.48505 * 109.47499 * 29.99744 * 3 2 1 6 6 H 1.48500 * 109.47262 * 150.00006 * 3 2 1 7 7 C 1.37879 * 119.99350 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00409 * 0.02562 * 7 2 1 9 9 C 1.50706 * 119.99394 * 180.02562 * 7 2 1 10 10 H 1.08994 * 110.28704 * 302.12754 * 9 7 2 11 11 C 1.54382 * 110.32463 * 64.36471 * 9 7 2 12 12 N 1.48559 * 104.59114 * 95.04013 * 11 9 7 13 13 C 1.48562 * 104.22505 * 39.48646 * 12 11 9 14 14 C 1.54259 * 110.32077 * 180.02562 * 9 7 2 15 15 H 1.09006 * 110.32513 * 359.97438 * 14 9 7 16 16 C 1.52999 * 110.32647 * 122.20902 * 14 9 7 17 17 O 1.42905 * 109.47388 * 185.00002 * 16 14 9 18 18 H 0.97005 * 119.99656 * 0.02562 * 1 2 3 19 19 H 1.08992 * 110.40791 * 213.81906 * 11 9 7 20 20 H 1.08998 * 110.41294 * 336.26325 * 11 9 7 21 21 H 1.00904 * 110.99490 * 159.03925 * 12 11 9 22 22 H 1.09005 * 110.40916 * 201.73831 * 13 12 11 23 23 H 1.09000 * 110.41430 * 79.29259 * 13 12 11 24 24 H 1.09001 * 109.46671 * 304.99955 * 16 14 9 25 25 H 1.08996 * 109.47090 * 64.99287 * 16 14 9 26 26 H 0.96694 * 114.00074 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 1 3.8897 -0.6507 -0.8646 11 6 4.0472 -0.5675 1.3064 12 7 4.2953 -1.7256 2.2032 13 6 4.8615 -2.7665 1.3071 14 6 4.0472 -2.6407 0.0010 15 1 3.2201 -3.3508 0.0010 16 6 4.9493 -2.8733 -1.2126 17 8 5.3410 -4.2469 -1.2589 18 1 -0.4850 0.8401 -0.0004 19 1 4.9751 -0.0283 1.1162 20 1 3.3022 0.0981 1.7423 21 1 4.9477 -1.4837 2.9339 22 1 4.7296 -3.7566 1.7436 23 1 5.9170 -2.5714 1.1171 24 1 4.4062 -2.6195 -2.1230 25 1 5.8363 -2.2450 -1.1317 26 1 5.9153 -4.4672 -2.0049 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000215148837.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:15 Heat of formation + Delta-G solvation = -44.081797 kcal Electronic energy + Delta-G solvation = -10289.355267 eV Core-core repulsion = 8368.025006 eV Total energy + Delta-G solvation = -1921.330261 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.25912 -35.91288 -32.54448 -30.46885 -28.86103 -24.86991 -23.32937 -20.86468 -18.94591 -17.00239 -16.35044 -15.75926 -15.06188 -14.31136 -13.43409 -13.05363 -12.75056 -12.37679 -11.75247 -11.54826 -10.99602 -10.63977 -10.45390 -10.10099 -9.84770 -9.50509 -9.29614 -9.08789 -8.49871 -7.80470 -6.02436 -3.99741 3.27850 3.36271 3.38603 4.44040 4.63625 5.05817 5.26562 5.43799 5.67050 5.84085 5.90125 6.05883 6.19893 6.21065 6.55007 6.59987 6.88438 7.12117 7.16495 7.57923 7.79129 7.93618 8.06476 8.58344 9.02748 9.58939 11.11107 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.054471 B = 0.016736 C = 0.015315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.915328 B = 1672.618840 C = 1827.775214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.861 3.139 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.246 1.246 7 C -0.496 4.496 8 H 0.075 0.925 9 C 0.021 3.979 10 H 0.028 0.972 11 C 0.036 3.964 12 N -0.658 5.658 13 C 0.049 3.951 14 C -0.079 4.079 15 H 0.086 0.914 16 C 0.083 3.917 17 O -0.575 6.575 18 H 0.262 0.738 19 H 0.010 0.990 20 H 0.082 0.918 21 H 0.318 0.682 22 H 0.070 0.930 23 H 0.025 0.975 24 H 0.049 0.951 25 H 0.035 0.965 26 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.075 -1.865 -0.929 11.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.133 4.133 3 Si 0.688 3.312 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.170 1.170 7 C -0.534 4.534 8 H 0.093 0.907 9 C 0.002 3.998 10 H 0.046 0.954 11 C -0.093 4.093 12 N -0.285 5.285 13 C -0.081 4.081 14 C -0.098 4.098 15 H 0.104 0.896 16 C 0.006 3.994 17 O -0.380 6.380 18 H 0.072 0.928 19 H 0.028 0.972 20 H 0.100 0.900 21 H 0.131 0.869 22 H 0.088 0.912 23 H 0.043 0.957 24 H 0.067 0.933 25 H 0.053 0.947 26 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 9.824 -2.020 -0.325 10.035 hybrid contribution 1.617 1.420 -0.715 2.268 sum 11.441 -0.599 -1.040 11.504 Atomic orbital electron populations 1.69906 1.06243 1.26749 1.51038 1.25013 0.94696 0.98930 0.94700 0.87364 0.81420 0.83926 0.78450 1.20790 1.21429 1.17040 1.20968 0.87932 0.94501 1.50006 0.90724 1.19801 0.97571 0.90280 0.92195 0.95389 1.23762 0.97356 0.92354 0.95868 1.63729 1.44782 1.08897 1.11122 1.22856 0.95013 0.96324 0.93858 1.21940 0.96740 1.00028 0.91073 0.89563 1.22439 0.96670 0.81182 0.99139 1.86524 1.71220 1.27854 1.52386 0.92769 0.97182 0.90023 0.86888 0.91187 0.95691 0.93269 0.94653 0.78597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.90 13.96 55.43 0.77 -27.13 15 2 C 0.07 1.96 5.37 -17.82 -0.10 1.86 15 3 Si 0.86 20.93 25.93 -169.99 -4.41 16.52 15 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 15 5 H -0.29 -7.07 7.11 56.52 0.40 -6.66 15 6 H -0.25 -5.49 4.58 56.52 0.26 -5.24 15 7 C -0.50 -14.13 9.08 -34.44 -0.31 -14.44 15 8 H 0.07 2.34 7.60 -52.49 -0.40 1.94 15 9 C 0.02 0.49 2.15 -90.39 -0.19 0.30 15 10 H 0.03 0.65 7.05 -51.93 -0.37 0.28 15 11 C 0.04 0.79 4.97 -2.18 -0.01 0.78 15 12 N -0.66 -13.40 7.62 -109.63 -0.84 -14.24 15 13 C 0.05 0.93 6.91 -2.15 -0.01 0.92 15 14 C -0.08 -1.65 2.97 -89.21 -0.26 -1.92 15 15 H 0.09 2.01 7.42 -51.93 -0.39 1.63 15 16 C 0.08 1.44 6.15 37.16 0.23 1.67 15 17 O -0.58 -9.08 13.55 -35.23 -0.48 -9.56 15 18 H 0.26 7.62 8.31 -40.82 -0.34 7.28 15 19 H 0.01 0.20 7.97 -51.93 -0.41 -0.21 15 20 H 0.08 1.96 5.16 -51.93 -0.27 1.69 15 21 H 0.32 5.42 8.92 -39.29 -0.35 5.07 15 22 H 0.07 1.29 8.14 -51.93 -0.42 0.87 15 23 H 0.02 0.43 7.75 -51.93 -0.40 0.03 15 24 H 0.05 0.84 8.14 -51.93 -0.42 0.42 15 25 H 0.04 0.55 7.98 -51.93 -0.41 0.14 15 26 H 0.37 3.79 9.12 45.56 0.42 4.21 15 LS Contribution 211.04 15.07 3.18 3.18 Total: -1.00 -31.86 211.04 -5.14 -36.99 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -2.71 Total: 5.07 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: -0.66 Total: -10.84 kcal Atomic # 7 Polarization: -41.30 SS G_CDS: -0.06 Total: -41.36 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: -0.48 Total: -9.56 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.41 Total: 16.52 kcal Total LS contribution 3.18 Total: 3.18 kcal Total: -31.86 -5.14 -36.99 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215148837.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.088 kcal (2) G-P(sol) polarization free energy of solvation -31.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds