Wall clock time and date at job start Mon Mar 30 2020 02:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86789 * 120.00192 * 2 1 4 4 H 1.48506 * 109.47200 * 269.99683 * 3 2 1 5 5 H 1.48505 * 109.47499 * 29.99744 * 3 2 1 6 6 H 1.48500 * 109.47262 * 150.00006 * 3 2 1 7 7 C 1.37879 * 119.99350 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00409 * 0.02562 * 7 2 1 9 9 C 1.50706 * 119.99394 * 180.02562 * 7 2 1 10 10 H 1.08994 * 110.28704 * 302.12754 * 9 7 2 11 11 C 1.54382 * 110.32463 * 64.36471 * 9 7 2 12 12 N 1.48559 * 104.59114 * 95.04013 * 11 9 7 13 13 C 1.48562 * 104.22505 * 39.48646 * 12 11 9 14 14 C 1.54259 * 110.32077 * 180.02562 * 9 7 2 15 15 H 1.09006 * 110.32513 * 359.97438 * 14 9 7 16 16 C 1.52999 * 110.32647 * 122.20902 * 14 9 7 17 17 O 1.42905 * 109.47388 * 185.00002 * 16 14 9 18 18 H 0.97005 * 119.99656 * 0.02562 * 1 2 3 19 19 H 1.08992 * 110.40791 * 213.81906 * 11 9 7 20 20 H 1.08998 * 110.41294 * 336.26325 * 11 9 7 21 21 H 1.00904 * 110.99490 * 159.03925 * 12 11 9 22 22 H 1.09005 * 110.40916 * 201.73831 * 13 12 11 23 23 H 1.09000 * 110.41430 * 79.29259 * 13 12 11 24 24 H 1.09001 * 109.46671 * 304.99955 * 16 14 9 25 25 H 1.08996 * 109.47090 * 64.99287 * 16 14 9 26 26 H 0.96694 * 114.00074 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 1 3.8897 -0.6507 -0.8646 11 6 4.0472 -0.5675 1.3064 12 7 4.2953 -1.7256 2.2032 13 6 4.8615 -2.7665 1.3071 14 6 4.0472 -2.6407 0.0010 15 1 3.2201 -3.3508 0.0010 16 6 4.9493 -2.8733 -1.2126 17 8 5.3410 -4.2469 -1.2589 18 1 -0.4850 0.8401 -0.0004 19 1 4.9751 -0.0283 1.1162 20 1 3.3022 0.0981 1.7423 21 1 4.9477 -1.4837 2.9339 22 1 4.7296 -3.7566 1.7436 23 1 5.9170 -2.5714 1.1171 24 1 4.4062 -2.6195 -2.1230 25 1 5.8363 -2.2450 -1.1317 26 1 5.9153 -4.4672 -2.0049 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000215148837.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:15 Heat of formation + Delta-G solvation = -72.401195 kcal Electronic energy + Delta-G solvation = -10290.583289 eV Core-core repulsion = 8368.025006 eV Total energy + Delta-G solvation = -1922.558282 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.86465 -37.24128 -34.67777 -32.13240 -30.64750 -26.61558 -25.07243 -22.57247 -20.63365 -18.76894 -18.02513 -17.38097 -16.73377 -15.95589 -15.12330 -14.79936 -14.24180 -14.20296 -13.47367 -13.28497 -12.68132 -12.42731 -12.12989 -11.84616 -11.56611 -11.29745 -11.07919 -10.78805 -10.64116 -9.33978 -8.24978 -6.28760 1.38505 1.39716 1.50263 2.39275 3.07205 3.37054 3.62575 3.90237 4.19710 4.27996 4.44235 4.53847 4.64102 4.74688 4.85569 4.96944 5.19642 5.39828 5.44811 5.67594 5.95058 6.36712 6.63797 6.77741 6.98585 7.34562 8.92549 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.054471 B = 0.016736 C = 0.015315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.915328 B = 1672.618840 C = 1827.775214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C 0.003 3.997 3 Si 0.934 3.066 4 H -0.273 1.273 5 H -0.293 1.293 6 H -0.208 1.208 7 C -0.504 4.504 8 H 0.019 0.981 9 C 0.016 3.984 10 H 0.042 0.958 11 C 0.038 3.962 12 N -0.678 5.678 13 C 0.057 3.943 14 C -0.085 4.085 15 H 0.044 0.956 16 C 0.093 3.907 17 O -0.588 6.588 18 H 0.264 0.736 19 H 0.045 0.955 20 H 0.060 0.940 21 H 0.340 0.660 22 H 0.070 0.930 23 H 0.057 0.943 24 H 0.044 0.956 25 H 0.065 0.935 26 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.267 -0.874 -0.922 14.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.193 4.193 3 Si 0.757 3.243 4 H -0.199 1.199 5 H -0.219 1.219 6 H -0.130 1.130 7 C -0.542 4.542 8 H 0.037 0.963 9 C -0.004 4.004 10 H 0.060 0.940 11 C -0.091 4.091 12 N -0.308 5.308 13 C -0.072 4.072 14 C -0.104 4.104 15 H 0.062 0.938 16 C 0.015 3.985 17 O -0.396 6.396 18 H 0.072 0.928 19 H 0.063 0.937 20 H 0.079 0.921 21 H 0.155 0.845 22 H 0.089 0.911 23 H 0.075 0.925 24 H 0.062 0.938 25 H 0.083 0.917 26 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 13.062 -1.064 -0.324 13.110 hybrid contribution 0.561 0.949 -0.725 1.319 sum 13.623 -0.115 -1.050 13.664 Atomic orbital electron populations 1.70095 1.08616 1.27956 1.53061 1.26040 0.95542 1.03611 0.94120 0.86203 0.81378 0.77611 0.79122 1.19886 1.21909 1.12986 1.21221 0.90996 0.92468 1.49535 0.96268 1.19770 0.94061 0.92690 0.93841 0.94006 1.23546 0.98133 0.92757 0.94658 1.63598 1.46600 1.08670 1.11885 1.22807 0.96115 0.96028 0.92259 1.21862 0.96760 0.97321 0.94480 0.93756 1.22195 0.96949 0.82479 0.96847 1.86454 1.72109 1.26935 1.54130 0.92759 0.93725 0.92138 0.84452 0.91120 0.92500 0.93754 0.91689 0.75540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.57 13.96 21.45 0.30 -61.27 15 2 C 0.00 0.15 5.37 84.66 0.45 0.60 15 3 Si 0.93 42.73 25.93 68.60 1.78 44.51 15 4 H -0.27 -12.07 7.11 99.48 0.71 -11.37 15 5 H -0.29 -13.54 7.11 99.48 0.71 -12.83 15 6 H -0.21 -8.17 4.58 99.48 0.46 -7.71 15 7 C -0.50 -29.61 9.08 25.60 0.23 -29.38 15 8 H 0.02 1.29 7.60 -2.91 -0.02 1.26 15 9 C 0.02 0.72 2.15 -10.64 -0.02 0.70 15 10 H 0.04 1.81 7.05 -2.39 -0.02 1.79 15 11 C 0.04 1.57 4.97 86.45 0.43 1.99 15 12 N -0.68 -25.78 7.62 -500.76 -3.82 -29.59 15 13 C 0.06 2.00 6.91 86.47 0.60 2.60 15 14 C -0.08 -3.47 2.97 -9.88 -0.03 -3.50 15 15 H 0.04 2.14 7.42 -2.38 -0.02 2.12 15 16 C 0.09 2.95 6.15 71.98 0.44 3.39 15 17 O -0.59 -16.89 13.55 -148.98 -2.02 -18.91 15 18 H 0.26 15.85 8.31 -92.70 -0.77 15.08 15 19 H 0.04 1.55 7.97 -2.39 -0.02 1.53 15 20 H 0.06 2.73 5.16 -2.39 -0.01 2.72 15 21 H 0.34 10.33 8.92 -89.69 -0.80 9.53 15 22 H 0.07 2.47 8.14 -2.38 -0.02 2.45 15 23 H 0.06 1.67 7.75 -2.39 -0.02 1.65 15 24 H 0.04 1.43 8.14 -2.39 -0.02 1.41 15 25 H 0.07 1.71 7.98 -2.39 -0.02 1.69 15 26 H 0.40 6.73 9.12 -74.06 -0.68 6.05 15 Total: -1.00 -71.28 211.04 -2.19 -73.47 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -0.54 Total: 15.38 kcal Atomic # 6 Polarization: -25.69 SS G_CDS: 2.11 Total: -23.59 kcal Atomic # 7 Polarization: -87.34 SS G_CDS: -3.52 Total: -90.86 kcal Atomic # 8 Polarization: -16.89 SS G_CDS: -2.02 Total: -18.91 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 1.78 Total: 44.51 kcal Total: -71.28 -2.19 -73.47 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215148837.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.068 kcal (2) G-P(sol) polarization free energy of solvation -71.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds