Wall clock time and date at job start Mon Mar 30 2020 02:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86789 * 120.00192 * 2 1 4 4 H 1.48506 * 109.47200 * 269.99683 * 3 2 1 5 5 H 1.48505 * 109.47499 * 29.99744 * 3 2 1 6 6 H 1.48500 * 109.47262 * 150.00006 * 3 2 1 7 7 C 1.37879 * 119.99350 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00409 * 0.02562 * 7 2 1 9 9 C 1.50706 * 119.99394 * 180.02562 * 7 2 1 10 10 H 1.08998 * 109.47946 * 300.02245 * 9 7 2 11 11 C 1.53095 * 109.47644 * 180.02562 * 9 7 2 12 12 C 1.53183 * 109.16266 * 182.40818 * 11 9 7 13 13 C 1.53179 * 109.03347 * 56.97729 * 12 11 9 14 14 H 1.09000 * 109.52355 * 183.11452 * 13 12 11 15 15 N 1.46903 * 109.52029 * 62.92817 * 13 12 11 16 16 C 1.53093 * 109.16680 * 303.02078 * 13 12 11 17 17 O 1.42898 * 109.48326 * 60.06080 * 9 7 2 18 18 H 0.97005 * 119.99656 * 0.02562 * 1 2 3 19 19 H 1.09005 * 109.51995 * 302.30863 * 11 9 7 20 20 H 1.08991 * 109.52524 * 62.50300 * 11 9 7 21 21 H 1.08996 * 109.54208 * 176.84497 * 12 11 9 22 22 H 1.08996 * 109.53920 * 297.02527 * 12 11 9 23 23 H 1.00906 * 110.99788 * 179.97438 * 15 13 12 24 24 H 1.00901 * 111.00296 * 303.94801 * 15 13 12 25 25 H 1.08998 * 109.48137 * 177.59341 * 16 13 12 26 26 H 1.08993 * 109.47809 * 297.61613 * 16 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 1 3.8753 -0.6802 -0.8886 11 6 4.0219 -2.6375 0.0010 12 6 5.5525 -2.6296 0.0624 13 6 5.9985 -1.8552 1.3065 14 1 7.0867 -1.7971 1.3287 15 7 5.5178 -2.5438 2.5118 16 6 5.4117 -0.4421 1.2562 17 8 3.9876 -0.5216 1.1685 18 1 -0.4850 0.8401 -0.0004 19 1 3.6253 -3.1642 0.8691 20 1 3.6966 -3.1389 -0.9104 21 1 5.9204 -3.6540 0.1191 22 1 5.9506 -2.1480 -0.8307 23 1 5.8001 -2.0517 3.3463 24 1 4.5164 -2.6644 2.4843 25 1 5.6906 0.0997 2.1599 26 1 5.8007 0.0821 0.3834 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000224689501.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:00 Heat of formation + Delta-G solvation = -53.767743 kcal Electronic energy + Delta-G solvation = -10525.065191 eV Core-core repulsion = 8603.314916 eV Total energy + Delta-G solvation = -1921.750275 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.78369 -34.13137 -32.65598 -31.30824 -28.47445 -25.72409 -23.50746 -21.30811 -18.82656 -16.87033 -16.16150 -15.22414 -15.05167 -14.13461 -13.70594 -13.24102 -12.85707 -12.46844 -11.96844 -11.72348 -11.01917 -10.80736 -10.59549 -10.04614 -9.90256 -9.67615 -9.13249 -8.69366 -8.58157 -7.87203 -6.13167 -4.21466 3.36045 3.43180 3.64094 4.50956 4.78193 5.02178 5.27988 5.40671 5.53267 5.63203 5.83694 6.00318 6.10296 6.30460 6.36354 6.53483 6.65522 6.71272 7.17199 7.53669 7.62064 7.85685 8.39896 8.49485 8.89821 9.51022 10.97125 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.064934 B = 0.018242 C = 0.016253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.102340 B = 1534.530314 C = 1722.362823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.082 3.918 3 Si 0.877 3.123 4 H -0.287 1.287 5 H -0.293 1.293 6 H -0.228 1.228 7 C -0.517 4.517 8 H 0.080 0.920 9 C 0.181 3.819 10 H 0.012 0.988 11 C -0.134 4.134 12 C -0.117 4.117 13 C 0.059 3.941 14 H 0.073 0.927 15 N -0.840 5.840 16 C 0.018 3.982 17 O -0.377 6.377 18 H 0.265 0.735 19 H 0.065 0.935 20 H 0.063 0.937 21 H 0.062 0.938 22 H 0.058 0.942 23 H 0.332 0.668 24 H 0.351 0.649 25 H 0.071 0.929 26 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.599 -1.042 1.545 10.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.122 4.122 3 Si 0.704 3.296 4 H -0.214 1.214 5 H -0.220 1.220 6 H -0.151 1.151 7 C -0.554 4.554 8 H 0.098 0.902 9 C 0.125 3.875 10 H 0.029 0.971 11 C -0.172 4.172 12 C -0.155 4.155 13 C -0.053 4.053 14 H 0.091 0.909 15 N -0.370 5.370 16 C -0.062 4.062 17 O -0.297 6.297 18 H 0.075 0.925 19 H 0.084 0.916 20 H 0.082 0.918 21 H 0.081 0.919 22 H 0.077 0.923 23 H 0.143 0.857 24 H 0.166 0.834 25 H 0.089 0.911 26 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 10.766 -1.494 1.435 10.964 hybrid contribution -0.044 1.714 -0.043 1.715 sum 10.722 0.220 1.392 10.814 Atomic orbital electron populations 1.69935 1.06684 1.27472 1.48695 1.25072 0.94686 0.99959 0.92510 0.86955 0.82660 0.82041 0.77986 1.21410 1.21965 1.15073 1.20933 0.87422 0.94857 1.52179 0.90239 1.20206 0.95086 0.87906 0.84276 0.97088 1.22067 0.93183 0.99973 1.02013 1.21665 0.97752 0.99950 0.96086 1.21992 0.98520 0.93177 0.91635 0.90872 1.59118 1.20427 1.54084 1.03400 1.23133 0.86486 0.96208 1.00324 1.88430 1.16298 1.77710 1.47241 0.92504 0.91633 0.91840 0.91939 0.92317 0.85693 0.83369 0.91061 0.94602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.47 13.96 55.43 0.77 -26.69 15 2 C 0.08 2.42 5.47 -17.82 -0.10 2.32 15 3 Si 0.88 22.15 26.99 -169.99 -4.59 17.57 15 4 H -0.29 -7.17 7.11 56.52 0.40 -6.77 15 5 H -0.29 -7.43 7.11 56.52 0.40 -7.03 15 6 H -0.23 -5.54 5.17 56.52 0.29 -5.25 15 7 C -0.52 -14.78 9.38 -34.44 -0.32 -15.10 15 8 H 0.08 2.42 7.99 -52.49 -0.42 2.00 15 9 C 0.18 4.33 1.99 -27.83 -0.06 4.27 15 10 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 15 11 C -0.13 -2.72 5.02 -26.59 -0.13 -2.85 15 12 C -0.12 -1.97 5.72 -26.54 -0.15 -2.12 15 13 C 0.06 0.96 3.72 -67.57 -0.25 0.71 15 14 H 0.07 1.05 8.14 -51.93 -0.42 0.62 15 15 N -0.84 -13.40 9.24 -4.55 -0.04 -13.44 15 16 C 0.02 0.33 6.28 37.21 0.23 0.57 15 17 O -0.38 -8.74 6.88 -35.23 -0.24 -8.98 15 18 H 0.27 7.67 8.31 -40.82 -0.34 7.33 15 19 H 0.07 1.36 6.74 -51.93 -0.35 1.01 15 20 H 0.06 1.25 8.14 -51.93 -0.42 0.83 15 21 H 0.06 0.98 8.14 -51.93 -0.42 0.56 15 22 H 0.06 0.93 8.14 -51.93 -0.42 0.51 15 23 H 0.33 4.65 9.04 -39.29 -0.36 4.30 15 24 H 0.35 6.26 6.77 -39.29 -0.27 5.99 15 25 H 0.07 1.19 8.14 -51.93 -0.42 0.77 15 26 H 0.04 0.64 8.14 -51.93 -0.42 0.22 15 LS Contribution 209.28 15.07 3.15 3.15 Total: -1.00 -30.33 209.28 -5.29 -35.61 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -3.56 Total: 4.98 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: -0.78 Total: -12.21 kcal Atomic # 7 Polarization: -40.86 SS G_CDS: 0.73 Total: -40.13 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: -0.24 Total: -8.98 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.59 Total: 17.57 kcal Total LS contribution 3.15 Total: 3.15 kcal Total: -30.33 -5.29 -35.61 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224689501.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.153 kcal (2) G-P(sol) polarization free energy of solvation -30.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds