Wall clock time and date at job start Mon Mar 30 2020 02:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 110.43979 * 2 1 4 4 C 1.36939 * 119.99933 * 61.36718 * 3 2 1 5 5 H 1.08001 * 119.99700 * 359.72658 * 4 3 2 6 6 C 1.38810 * 120.00095 * 179.71972 * 4 3 2 7 7 N 1.31624 * 119.99740 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 120.00044 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.47201 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47080 * 120.00466 * 8 6 4 11 11 H 1.48506 * 109.47018 * 240.00565 * 8 6 4 12 12 C 1.54818 * 110.59830 * 237.37597 * 2 1 3 13 13 C 1.55001 * 102.09154 * 220.38980 * 12 2 1 14 14 O 1.44381 * 103.48791 * 37.02775 * 13 12 2 15 15 C 1.43741 * 106.97775 * 319.93516 * 14 13 12 16 16 H 1.08999 * 109.46676 * 60.69656 * 1 2 3 17 17 H 1.08994 * 109.47666 * 180.69857 * 1 2 3 18 18 H 1.09006 * 109.46853 * 300.70333 * 1 2 3 19 19 H 0.97001 * 119.99790 * 241.08691 * 3 2 1 20 20 H 0.96998 * 119.99409 * 179.97438 * 7 6 4 21 21 H 1.08999 * 110.90586 * 338.58819 * 12 2 1 22 22 H 1.08991 * 110.90431 * 102.19429 * 12 2 1 23 23 H 1.08996 * 110.61893 * 278.52420 * 13 12 2 24 24 H 1.08999 * 110.75055 * 155.58552 * 13 12 2 25 25 H 1.08998 * 109.88103 * 267.09509 * 15 14 13 26 26 H 1.08996 * 110.00746 * 146.00831 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0416 1.3728 0.0000 4 6 1.7482 2.2128 1.0409 5 1 1.1359 1.8646 1.8597 6 6 2.2377 3.5117 1.0438 7 7 2.9836 3.9360 0.0457 8 14 1.8369 4.6578 2.4633 9 1 0.9876 3.9445 3.4507 10 1 3.0964 5.0941 3.1180 11 1 1.1085 5.8457 1.9499 12 6 2.0747 -0.7813 -1.2206 13 6 3.2695 -1.5534 -0.6050 14 8 2.7980 -1.9085 0.7126 15 6 2.0693 -0.7767 1.2169 16 1 -0.3632 0.5030 -0.8962 17 1 -0.3634 -1.0275 0.0125 18 1 -0.3633 0.5248 0.8837 19 1 2.5915 1.6853 -0.7354 20 1 3.3253 4.8438 0.0476 21 1 1.3241 -1.4705 -1.6077 22 1 2.4128 -0.0986 -2.0000 23 1 4.1478 -0.9115 -0.5384 24 1 3.4923 -2.4477 -1.1868 25 1 2.7332 -0.1381 1.7995 26 1 1.2399 -1.1140 1.8384 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229457225.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:51 Heat of formation + Delta-G solvation = -38.940188 kcal Electronic energy + Delta-G solvation = -10330.324802 eV Core-core repulsion = 8409.217498 eV Total energy + Delta-G solvation = -1921.107304 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.98332 -34.72291 -32.05855 -29.51267 -28.49836 -25.52671 -23.79293 -22.00114 -18.98964 -17.10729 -15.80475 -15.38061 -14.29569 -14.22924 -13.46414 -13.15702 -12.71292 -12.01912 -11.76013 -11.40957 -10.89504 -10.84604 -10.70711 -10.45618 -10.33129 -9.80749 -9.63315 -9.00775 -8.95236 -7.02049 -5.80498 -3.09768 3.41317 3.47303 3.49251 4.50778 4.61107 5.20558 5.35811 5.54690 5.57353 5.73095 5.85872 6.04222 6.11503 6.25206 6.36783 6.50107 6.54411 6.74489 6.80663 7.01257 7.43803 7.70253 8.38175 9.49209 10.05214 10.40419 11.42203 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.067271 B = 0.014052 C = 0.013749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 416.126491 B = 1992.073341 C = 2036.015014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.169 3.831 3 N -0.715 5.715 4 C -0.238 4.238 5 H 0.072 0.928 6 C -0.013 4.013 7 N -0.932 5.932 8 Si 0.906 3.094 9 H -0.280 1.280 10 H -0.291 1.291 11 H -0.291 1.291 12 C -0.155 4.155 13 C 0.051 3.949 14 O -0.392 6.392 15 C 0.033 3.967 16 H 0.052 0.948 17 H 0.041 0.959 18 H 0.057 0.943 19 H 0.385 0.615 20 H 0.255 0.745 21 H 0.073 0.927 22 H 0.079 0.921 23 H 0.059 0.941 24 H 0.081 0.919 25 H 0.070 0.930 26 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.133 -7.920 -1.215 8.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.077 3.923 3 N -0.357 5.357 4 C -0.369 4.369 5 H 0.090 0.910 6 C -0.209 4.209 7 N -0.580 5.580 8 Si 0.737 3.263 9 H -0.205 1.205 10 H -0.218 1.218 11 H -0.218 1.218 12 C -0.193 4.193 13 C -0.026 4.026 14 O -0.311 6.311 15 C -0.045 4.045 16 H 0.071 0.929 17 H 0.060 0.940 18 H 0.076 0.924 19 H 0.220 0.780 20 H 0.065 0.935 21 H 0.092 0.908 22 H 0.098 0.902 23 H 0.077 0.923 24 H 0.099 0.901 25 H 0.088 0.912 26 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.154 -8.017 -0.952 8.356 hybrid contribution -0.051 1.114 0.441 1.200 sum -2.205 -6.903 -0.511 7.265 Atomic orbital electron populations 1.22163 0.96686 0.99397 1.02245 1.20886 0.92989 0.86743 0.91695 1.42506 1.61048 1.06526 1.25620 1.19209 1.25983 0.92458 0.99218 0.90998 1.24746 1.00399 0.97497 0.98232 1.69673 1.39143 1.17452 1.31768 0.86131 0.77485 0.81014 0.81664 1.20508 1.21841 1.21846 1.23309 0.98070 0.99283 0.98601 1.23417 0.96600 0.98560 0.83978 1.88734 1.72509 1.38380 1.31453 1.23989 0.95561 0.87229 0.97767 0.92916 0.94006 0.92417 0.78042 0.93525 0.90847 0.90208 0.92307 0.90112 0.91162 0.91251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 8.26 37.16 0.31 -2.40 15 2 C 0.17 3.42 1.09 -130.28 -0.14 3.28 15 3 N -0.71 -17.73 5.13 -45.81 -0.24 -17.97 15 4 C -0.24 -6.47 8.55 -15.06 -0.13 -6.60 15 5 H 0.07 1.91 7.38 -52.49 -0.39 1.52 15 6 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 15 7 N -0.93 -27.91 13.06 55.49 0.72 -27.19 15 8 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 15 9 H -0.28 -6.66 7.11 56.52 0.40 -6.26 15 10 H -0.29 -7.22 7.11 56.52 0.40 -6.82 15 11 H -0.29 -7.21 7.11 56.52 0.40 -6.81 15 12 C -0.15 -2.64 6.39 -24.72 -0.16 -2.80 15 13 C 0.05 0.86 7.72 38.21 0.29 1.15 15 14 O -0.39 -7.59 11.52 -35.23 -0.41 -7.99 15 15 C 0.03 0.67 6.87 37.74 0.26 0.93 15 16 H 0.05 0.98 8.14 -51.93 -0.42 0.55 15 17 H 0.04 0.67 8.14 -51.93 -0.42 0.24 15 18 H 0.06 1.13 7.41 -51.93 -0.38 0.74 15 19 H 0.38 10.14 7.46 -40.82 -0.30 9.84 15 20 H 0.25 7.39 8.31 -40.82 -0.34 7.05 15 21 H 0.07 1.11 7.88 -51.93 -0.41 0.70 15 22 H 0.08 1.36 7.73 -51.93 -0.40 0.95 15 23 H 0.06 1.03 8.14 -51.93 -0.42 0.61 15 24 H 0.08 1.11 8.14 -51.93 -0.42 0.69 15 25 H 0.07 1.58 7.47 -51.93 -0.39 1.19 15 26 H 0.07 1.29 7.69 -51.93 -0.40 0.89 15 LS Contribution 218.86 15.07 3.30 3.30 Total: -1.00 -29.59 218.86 -4.81 -34.40 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -3.50 Total: 5.08 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: 0.34 Total: -6.89 kcal Atomic # 7 Polarization: -45.64 SS G_CDS: 0.49 Total: -45.16 kcal Atomic # 8 Polarization: -7.59 SS G_CDS: -0.41 Total: -7.99 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 3.30 Total: 3.30 kcal Total: -29.59 -4.81 -34.40 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229457225.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.540 kcal (2) G-P(sol) polarization free energy of solvation -29.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds