Wall clock time and date at job start Mon Mar 30 2020 02:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 110.43979 * 2 1 4 4 C 1.36939 * 119.99933 * 61.36718 * 3 2 1 5 5 H 1.08001 * 119.99700 * 359.72658 * 4 3 2 6 6 C 1.38810 * 120.00095 * 179.71972 * 4 3 2 7 7 N 1.31624 * 119.99740 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 120.00044 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.47201 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47080 * 120.00466 * 8 6 4 11 11 H 1.48506 * 109.47018 * 240.00565 * 8 6 4 12 12 C 1.54818 * 110.59830 * 237.37597 * 2 1 3 13 13 C 1.55001 * 102.09154 * 220.38980 * 12 2 1 14 14 O 1.44381 * 103.48791 * 37.02775 * 13 12 2 15 15 C 1.43741 * 106.97775 * 319.93516 * 14 13 12 16 16 H 1.08999 * 109.46676 * 60.69656 * 1 2 3 17 17 H 1.08994 * 109.47666 * 180.69857 * 1 2 3 18 18 H 1.09006 * 109.46853 * 300.70333 * 1 2 3 19 19 H 0.97001 * 119.99790 * 241.08691 * 3 2 1 20 20 H 0.96998 * 119.99409 * 179.97438 * 7 6 4 21 21 H 1.08999 * 110.90586 * 338.58819 * 12 2 1 22 22 H 1.08991 * 110.90431 * 102.19429 * 12 2 1 23 23 H 1.08996 * 110.61893 * 278.52420 * 13 12 2 24 24 H 1.08999 * 110.75055 * 155.58552 * 13 12 2 25 25 H 1.08998 * 109.88103 * 267.09509 * 15 14 13 26 26 H 1.08996 * 110.00746 * 146.00831 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0416 1.3728 0.0000 4 6 1.7482 2.2128 1.0409 5 1 1.1359 1.8646 1.8597 6 6 2.2377 3.5117 1.0438 7 7 2.9836 3.9360 0.0457 8 14 1.8369 4.6578 2.4633 9 1 0.9876 3.9445 3.4507 10 1 3.0964 5.0941 3.1180 11 1 1.1085 5.8457 1.9499 12 6 2.0747 -0.7813 -1.2206 13 6 3.2695 -1.5534 -0.6050 14 8 2.7980 -1.9085 0.7126 15 6 2.0693 -0.7767 1.2169 16 1 -0.3632 0.5030 -0.8962 17 1 -0.3634 -1.0275 0.0125 18 1 -0.3633 0.5248 0.8837 19 1 2.5915 1.6853 -0.7354 20 1 3.3253 4.8438 0.0476 21 1 1.3241 -1.4705 -1.6077 22 1 2.4128 -0.0986 -2.0000 23 1 4.1478 -0.9115 -0.5384 24 1 3.4923 -2.4477 -1.1868 25 1 2.7332 -0.1381 1.7995 26 1 1.2399 -1.1140 1.8384 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229457225.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:51 Heat of formation + Delta-G solvation = -59.922957 kcal Electronic energy + Delta-G solvation = -10331.234683 eV Core-core repulsion = 8409.217498 eV Total energy + Delta-G solvation = -1922.017185 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.51957 -36.50171 -33.96660 -31.13518 -30.21264 -27.09393 -25.81384 -23.44466 -20.62624 -19.12515 -17.47761 -16.88077 -16.14375 -15.78443 -15.32148 -14.95308 -14.19617 -13.55446 -13.39778 -13.12386 -12.83386 -12.53704 -12.28164 -12.15846 -11.96953 -11.62569 -11.39502 -10.98139 -10.54200 -9.05192 -7.95120 -5.23555 1.46678 1.47200 1.56745 2.54711 3.10237 3.39032 3.72847 3.86649 4.09247 4.17303 4.42672 4.48199 4.78402 4.83274 4.94715 5.01375 5.04889 5.15322 5.26402 5.48055 5.54871 5.94245 6.29128 7.33507 8.07380 8.31010 9.28647 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.067271 B = 0.014052 C = 0.013749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 416.126491 B = 1992.073341 C = 2036.015014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.154 3.846 3 N -0.726 5.726 4 C -0.229 4.229 5 H 0.076 0.924 6 C -0.077 4.077 7 N -0.970 5.970 8 Si 0.967 3.033 9 H -0.266 1.266 10 H -0.296 1.296 11 H -0.294 1.294 12 C -0.147 4.147 13 C 0.048 3.952 14 O -0.398 6.398 15 C 0.039 3.961 16 H 0.049 0.951 17 H 0.074 0.926 18 H 0.042 0.958 19 H 0.373 0.627 20 H 0.250 0.750 21 H 0.103 0.897 22 H 0.077 0.923 23 H 0.043 0.957 24 H 0.120 0.880 25 H 0.038 0.962 26 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.015 -9.250 -1.150 9.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.063 3.937 3 N -0.367 5.367 4 C -0.361 4.361 5 H 0.094 0.906 6 C -0.269 4.269 7 N -0.621 5.621 8 Si 0.797 3.203 9 H -0.190 1.190 10 H -0.223 1.223 11 H -0.221 1.221 12 C -0.185 4.185 13 C -0.028 4.028 14 O -0.317 6.317 15 C -0.040 4.040 16 H 0.068 0.932 17 H 0.093 0.907 18 H 0.061 0.939 19 H 0.206 0.794 20 H 0.059 0.941 21 H 0.121 0.879 22 H 0.096 0.904 23 H 0.062 0.938 24 H 0.137 0.863 25 H 0.056 0.944 26 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.062 -9.397 -0.873 9.921 hybrid contribution 0.228 1.417 0.395 1.488 sum -2.834 -7.980 -0.478 8.482 Atomic orbital electron populations 1.22073 0.94996 1.01254 1.01429 1.21246 0.94120 0.84801 0.93487 1.42695 1.61092 1.08260 1.24645 1.19525 1.24414 0.92671 0.99470 0.90579 1.25509 1.01327 0.99274 1.00753 1.69817 1.41031 1.17484 1.33754 0.85152 0.77015 0.78967 0.79153 1.19033 1.22329 1.22104 1.23312 0.98712 0.99273 0.97180 1.23609 0.95849 1.00097 0.83235 1.88731 1.72481 1.37757 1.32747 1.23817 0.95365 0.87190 0.97585 0.93152 0.90741 0.93870 0.79382 0.94129 0.87904 0.90408 0.93827 0.86256 0.94378 0.89553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.81 8.26 71.98 0.59 -4.21 15 2 C 0.15 5.98 1.09 4.60 0.01 5.99 15 3 N -0.73 -35.90 5.13 -298.86 -1.53 -37.44 15 4 C -0.23 -12.45 8.55 84.03 0.72 -11.73 15 5 H 0.08 4.00 7.38 -2.91 -0.02 3.97 15 6 C -0.08 -4.37 5.50 84.86 0.47 -3.90 15 7 N -0.97 -59.04 13.06 21.65 0.28 -58.76 15 8 Si 0.97 46.08 29.55 68.60 2.03 48.10 15 9 H -0.27 -11.89 7.11 99.48 0.71 -11.18 15 10 H -0.30 -14.19 7.11 99.48 0.71 -13.48 15 11 H -0.29 -13.99 7.11 99.48 0.71 -13.28 15 12 C -0.15 -4.63 6.39 31.90 0.20 -4.43 15 13 C 0.05 1.50 7.72 72.67 0.56 2.06 15 14 O -0.40 -14.51 11.52 -148.98 -1.72 -16.22 15 15 C 0.04 1.52 6.87 72.36 0.50 2.02 15 16 H 0.05 1.75 8.14 -2.39 -0.02 1.73 15 17 H 0.07 2.09 8.14 -2.39 -0.02 2.07 15 18 H 0.04 1.60 7.41 -2.38 -0.02 1.58 15 19 H 0.37 19.89 7.46 -92.71 -0.69 19.20 15 20 H 0.25 14.79 8.31 -92.71 -0.77 14.01 15 21 H 0.10 2.66 7.88 -2.39 -0.02 2.64 15 22 H 0.08 2.50 7.73 -2.39 -0.02 2.49 15 23 H 0.04 1.48 8.14 -2.39 -0.02 1.46 15 24 H 0.12 2.81 8.14 -2.39 -0.02 2.79 15 25 H 0.04 1.71 7.47 -2.39 -0.02 1.69 15 26 H 0.09 3.02 7.69 -2.39 -0.02 3.00 15 Total: -1.00 -62.40 218.86 2.58 -59.82 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: 0.47 Total: 18.70 kcal Atomic # 6 Polarization: -17.25 SS G_CDS: 3.05 Total: -14.21 kcal Atomic # 7 Polarization: -94.95 SS G_CDS: -1.25 Total: -96.20 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: -1.72 Total: -16.22 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.10 kcal Total: -62.40 2.58 -59.82 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229457225.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.100 kcal (2) G-P(sol) polarization free energy of solvation -62.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds