Wall clock time and date at job start Mon Mar 30 2020 01:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46497 * 110.36862 * 2 1 4 4 C 1.36939 * 119.99701 * 57.82514 * 3 2 1 5 5 H 1.07995 * 120.00426 * 359.97438 * 4 3 2 6 6 C 1.38817 * 120.00063 * 179.97438 * 4 3 2 7 7 N 1.31616 * 120.00292 * 179.97438 * 6 4 3 8 8 Si 1.86803 * 119.99786 * 359.97438 * 6 4 3 9 9 H 1.48497 * 109.46836 * 90.00156 * 8 6 4 10 10 H 1.48495 * 109.46883 * 210.00113 * 8 6 4 11 11 H 1.48497 * 109.47174 * 329.99790 * 8 6 4 12 12 C 1.54268 * 110.31971 * 237.82649 * 2 1 3 13 13 C 1.54388 * 105.05642 * 241.10088 * 12 2 1 14 14 N 1.48558 * 104.59594 * 336.14807 * 13 12 2 15 15 C 1.48568 * 104.22068 * 39.48270 * 14 13 12 16 16 H 1.09002 * 109.47429 * 182.17781 * 1 2 3 17 17 H 1.09006 * 109.47129 * 302.17388 * 1 2 3 18 18 H 1.09001 * 109.47523 * 62.17529 * 1 2 3 19 19 H 0.97005 * 120.00655 * 237.81900 * 3 2 1 20 20 H 0.96992 * 120.00151 * 179.97438 * 7 6 4 21 21 H 1.09001 * 110.32326 * 122.20760 * 12 2 1 22 22 H 1.08993 * 110.32443 * 359.97438 * 12 2 1 23 23 H 1.08999 * 110.40932 * 217.36937 * 13 12 2 24 24 H 1.09004 * 110.40796 * 94.92485 * 13 12 2 25 25 H 1.00901 * 110.99875 * 159.03649 * 14 13 12 26 26 H 1.08998 * 110.41219 * 79.29956 * 15 14 13 27 27 H 1.09002 * 110.40575 * 201.73911 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0399 1.3734 0.0000 4 6 1.6861 2.2350 1.0038 5 1 1.0309 1.9023 1.7953 6 6 2.1697 3.5362 1.0042 7 7 1.8293 4.3646 1.9687 8 14 3.3035 4.1116 -0.3643 9 1 2.4936 4.6769 -1.4732 10 1 4.2219 5.1544 0.1594 11 1 4.0963 2.9610 -0.8669 12 6 2.0657 -0.7703 -1.2245 13 6 2.8806 -1.9422 -0.6361 14 7 3.2694 -1.4830 0.7222 15 6 2.0662 -0.7712 1.2251 16 1 -0.3634 -1.0269 0.0391 17 1 -0.3634 0.5473 0.8699 18 1 -0.3634 0.4797 -0.9088 19 1 2.6281 1.6724 -0.7110 20 1 2.1674 5.2736 1.9691 21 1 2.7080 -0.1266 -1.8254 22 1 1.2387 -1.1487 -1.8252 23 1 3.7670 -2.1307 -1.2418 24 1 2.2647 -2.8392 -0.5723 25 1 3.5011 -2.2653 1.3158 26 1 1.3229 -1.4850 1.5802 27 1 2.3395 -0.0781 2.0208 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230739841.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:15 Heat of formation + Delta-G solvation = 17.093854 kcal Electronic energy + Delta-G solvation = -10240.153106 eV Core-core repulsion = 8419.194282 eV Total energy + Delta-G solvation = -1820.958824 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.48258 -33.99198 -31.55665 -29.33540 -28.55686 -25.05143 -23.13582 -21.11123 -18.56106 -17.51979 -15.82307 -15.33493 -14.21640 -13.80732 -12.79791 -12.67980 -12.50074 -11.94492 -11.76323 -11.62173 -11.22639 -10.86314 -10.58241 -10.39887 -10.20693 -9.83829 -9.44637 -8.86671 -8.12043 -7.18404 -5.70323 -3.04205 3.44110 3.49220 3.51335 4.66662 4.74048 5.14307 5.25752 5.36536 5.53037 5.65650 5.83104 5.97581 6.04939 6.15911 6.31726 6.41743 6.53223 6.58502 6.90594 6.99949 7.28235 7.73056 8.06564 8.49542 9.28590 10.01902 10.22569 11.48142 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.057767 B = 0.016215 C = 0.015164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.587639 B = 1726.333915 C = 1846.021487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.203 3.797 3 N -0.734 5.734 4 C -0.236 4.236 5 H 0.091 0.909 6 C 0.003 3.997 7 N -0.937 5.937 8 Si 0.883 3.117 9 H -0.286 1.286 10 H -0.292 1.292 11 H -0.275 1.275 12 C -0.127 4.127 13 C 0.037 3.963 14 N -0.660 5.660 15 C 0.024 3.976 16 H 0.038 0.962 17 H 0.062 0.938 18 H 0.051 0.949 19 H 0.362 0.638 20 H 0.258 0.742 21 H 0.070 0.930 22 H 0.067 0.933 23 H 0.071 0.929 24 H 0.032 0.968 25 H 0.324 0.676 26 H 0.026 0.974 27 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.162 -11.293 -5.359 12.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.111 3.889 3 N -0.377 5.377 4 C -0.366 4.366 5 H 0.108 0.892 6 C -0.192 4.192 7 N -0.585 5.585 8 Si 0.714 3.286 9 H -0.213 1.213 10 H -0.219 1.219 11 H -0.202 1.202 12 C -0.166 4.166 13 C -0.093 4.093 14 N -0.288 5.288 15 C -0.108 4.108 16 H 0.057 0.943 17 H 0.081 0.919 18 H 0.070 0.930 19 H 0.196 0.804 20 H 0.068 0.932 21 H 0.088 0.912 22 H 0.085 0.915 23 H 0.090 0.910 24 H 0.050 0.950 25 H 0.139 0.861 26 H 0.044 0.956 27 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.488 -10.571 -5.354 11.859 hybrid contribution 0.199 -0.211 -0.659 0.720 sum 0.687 -10.781 -6.013 12.364 Atomic orbital electron populations 1.22191 0.96690 0.99246 1.02594 1.20181 0.91957 0.85362 0.91387 1.42818 1.57693 1.07686 1.29511 1.18995 1.24068 0.91236 1.02255 0.89173 1.24635 1.00320 0.96349 0.97919 1.69697 1.49137 1.06111 1.33536 0.86552 0.81301 0.78239 0.82528 1.21324 1.21902 1.20150 1.22617 0.99031 0.96858 0.98077 1.22858 0.98227 0.95955 0.92229 1.63701 1.35481 1.26711 1.02874 1.23624 0.90071 0.96805 1.00255 0.94319 0.91857 0.92960 0.80437 0.93188 0.91157 0.91474 0.91024 0.94967 0.86139 0.95559 0.88808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 8.22 37.16 0.31 -2.40 15 2 C 0.20 4.01 1.13 -130.44 -0.15 3.86 15 3 N -0.73 -17.77 4.99 -45.96 -0.23 -18.00 15 4 C -0.24 -6.64 8.91 -15.06 -0.13 -6.78 15 5 H 0.09 2.70 7.39 -52.49 -0.39 2.31 15 6 C 0.00 0.09 5.50 -17.43 -0.10 0.00 15 7 N -0.94 -29.74 13.97 55.49 0.78 -28.96 15 8 Si 0.88 22.71 27.73 -169.99 -4.71 17.99 15 9 H -0.29 -7.29 7.11 56.52 0.40 -6.89 15 10 H -0.29 -7.63 7.11 56.52 0.40 -7.23 15 11 H -0.28 -6.80 6.52 56.52 0.37 -6.43 15 12 C -0.13 -2.10 6.43 -25.34 -0.16 -2.26 15 13 C 0.04 0.55 7.47 -2.18 -0.02 0.53 15 14 N -0.66 -11.18 7.62 -109.65 -0.84 -12.01 15 15 C 0.02 0.45 6.62 -2.18 -0.01 0.43 15 16 H 0.04 0.59 8.10 -51.93 -0.42 0.17 15 17 H 0.06 1.28 7.16 -51.93 -0.37 0.91 15 18 H 0.05 0.94 8.14 -51.93 -0.42 0.52 15 19 H 0.36 8.79 5.17 -40.82 -0.21 8.58 15 20 H 0.26 7.84 8.31 -40.82 -0.34 7.50 15 21 H 0.07 1.21 7.49 -51.93 -0.39 0.82 15 22 H 0.07 0.96 7.71 -51.93 -0.40 0.56 15 23 H 0.07 0.97 8.14 -51.93 -0.42 0.55 15 24 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 15 25 H 0.32 4.60 8.92 -39.29 -0.35 4.25 15 26 H 0.03 0.44 7.83 -51.93 -0.41 0.04 15 27 H 0.09 2.08 7.32 -51.93 -0.38 1.70 15 LS Contribution 219.16 15.07 3.30 3.30 Total: -1.00 -31.23 219.16 -5.72 -36.96 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -3.75 Total: 7.34 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: -0.27 Total: -6.62 kcal Atomic # 7 Polarization: -58.68 SS G_CDS: -0.29 Total: -58.97 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -4.71 Total: 17.99 kcal Total LS contribution 3.30 Total: 3.30 kcal Total: -31.23 -5.72 -36.96 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230739841.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.051 kcal (2) G-P(sol) polarization free energy of solvation -31.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds