Wall clock time and date at job start Mon Mar 30 2020 01:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46497 * 110.36862 * 2 1 4 4 C 1.36939 * 119.99701 * 57.82514 * 3 2 1 5 5 H 1.07995 * 120.00426 * 359.97438 * 4 3 2 6 6 C 1.38817 * 120.00063 * 179.97438 * 4 3 2 7 7 N 1.31616 * 120.00292 * 179.97438 * 6 4 3 8 8 Si 1.86803 * 119.99786 * 359.97438 * 6 4 3 9 9 H 1.48497 * 109.46836 * 90.00156 * 8 6 4 10 10 H 1.48495 * 109.46883 * 210.00113 * 8 6 4 11 11 H 1.48497 * 109.47174 * 329.99790 * 8 6 4 12 12 C 1.54268 * 110.31971 * 237.82649 * 2 1 3 13 13 C 1.54388 * 105.05642 * 241.10088 * 12 2 1 14 14 N 1.48558 * 104.59594 * 336.14807 * 13 12 2 15 15 C 1.48568 * 104.22068 * 39.48270 * 14 13 12 16 16 H 1.09002 * 109.47429 * 182.17781 * 1 2 3 17 17 H 1.09006 * 109.47129 * 302.17388 * 1 2 3 18 18 H 1.09001 * 109.47523 * 62.17529 * 1 2 3 19 19 H 0.97005 * 120.00655 * 237.81900 * 3 2 1 20 20 H 0.96992 * 120.00151 * 179.97438 * 7 6 4 21 21 H 1.09001 * 110.32326 * 122.20760 * 12 2 1 22 22 H 1.08993 * 110.32443 * 359.97438 * 12 2 1 23 23 H 1.08999 * 110.40932 * 217.36937 * 13 12 2 24 24 H 1.09004 * 110.40796 * 94.92485 * 13 12 2 25 25 H 1.00901 * 110.99875 * 159.03649 * 14 13 12 26 26 H 1.08998 * 110.41219 * 79.29956 * 15 14 13 27 27 H 1.09002 * 110.40575 * 201.73911 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0399 1.3734 0.0000 4 6 1.6861 2.2350 1.0038 5 1 1.0309 1.9023 1.7953 6 6 2.1697 3.5362 1.0042 7 7 1.8293 4.3646 1.9687 8 14 3.3035 4.1116 -0.3643 9 1 2.4936 4.6769 -1.4732 10 1 4.2219 5.1544 0.1594 11 1 4.0963 2.9610 -0.8669 12 6 2.0657 -0.7703 -1.2245 13 6 2.8806 -1.9422 -0.6361 14 7 3.2694 -1.4830 0.7222 15 6 2.0662 -0.7712 1.2251 16 1 -0.3634 -1.0269 0.0391 17 1 -0.3634 0.5473 0.8699 18 1 -0.3634 0.4797 -0.9088 19 1 2.6281 1.6724 -0.7110 20 1 2.1674 5.2736 1.9691 21 1 2.7080 -0.1266 -1.8254 22 1 1.2387 -1.1487 -1.8252 23 1 3.7670 -2.1307 -1.2418 24 1 2.2647 -2.8392 -0.5723 25 1 3.5011 -2.2653 1.3158 26 1 1.3229 -1.4850 1.5802 27 1 2.3395 -0.0781 2.0208 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230739841.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:15 Heat of formation + Delta-G solvation = -7.648073 kcal Electronic energy + Delta-G solvation = -10241.225996 eV Core-core repulsion = 8419.194282 eV Total energy + Delta-G solvation = -1822.031714 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.94804 -35.81244 -33.51510 -31.07295 -29.97009 -26.61419 -25.10805 -22.44611 -20.19016 -19.60268 -17.26731 -16.85301 -16.22333 -15.23686 -14.79550 -14.32792 -14.03340 -13.64314 -13.33654 -13.04704 -12.82201 -12.55365 -12.33233 -11.96800 -11.85909 -11.73926 -11.31735 -10.95709 -9.41466 -9.23662 -7.97429 -5.28428 1.38753 1.41844 1.49133 2.52162 3.30446 3.51517 3.57559 3.87261 4.02069 4.34828 4.43221 4.57369 4.79305 4.86837 4.97413 4.98309 5.06141 5.16010 5.41517 5.47968 5.84284 5.92875 6.28172 6.56311 7.13932 7.92406 8.09795 9.24458 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.057767 B = 0.016215 C = 0.015164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.587639 B = 1726.333915 C = 1846.021487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.184 3.816 3 N -0.739 5.739 4 C -0.210 4.210 5 H 0.060 0.940 6 C -0.070 4.070 7 N -0.988 5.988 8 Si 0.953 3.047 9 H -0.279 1.279 10 H -0.300 1.300 11 H -0.257 1.257 12 C -0.124 4.124 13 C 0.042 3.958 14 N -0.678 5.678 15 C 0.030 3.970 16 H 0.075 0.925 17 H 0.031 0.969 18 H 0.053 0.947 19 H 0.362 0.638 20 H 0.255 0.745 21 H 0.062 0.938 22 H 0.095 0.905 23 H 0.087 0.913 24 H 0.061 0.939 25 H 0.341 0.659 26 H 0.049 0.951 27 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.629 -13.365 -7.329 15.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.094 3.906 3 N -0.382 5.382 4 C -0.342 4.342 5 H 0.078 0.922 6 C -0.260 4.260 7 N -0.640 5.640 8 Si 0.781 3.219 9 H -0.206 1.206 10 H -0.227 1.227 11 H -0.182 1.182 12 C -0.162 4.162 13 C -0.087 4.087 14 N -0.307 5.307 15 C -0.101 4.101 16 H 0.094 0.906 17 H 0.050 0.950 18 H 0.072 0.928 19 H 0.196 0.804 20 H 0.064 0.936 21 H 0.081 0.919 22 H 0.113 0.887 23 H 0.105 0.895 24 H 0.079 0.921 25 H 0.156 0.844 26 H 0.067 0.933 27 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.952 -12.718 -7.350 14.719 hybrid contribution -0.002 0.304 -0.002 0.304 sum 0.950 -12.413 -7.351 14.458 Atomic orbital electron populations 1.22117 0.95640 1.01115 1.01194 1.20619 0.92742 0.83484 0.93765 1.42903 1.57827 1.09193 1.28316 1.18939 1.21815 0.91614 1.01795 0.92250 1.25425 1.02994 0.96814 1.00814 1.69875 1.51493 1.06439 1.36162 0.85428 0.79175 0.77844 0.79434 1.20574 1.22687 1.18227 1.22630 1.00062 0.96901 0.96620 1.22929 0.99168 0.96053 0.90598 1.63602 1.34648 1.28062 1.04412 1.23365 0.91438 0.96724 0.98595 0.90637 0.94962 0.92810 0.80397 0.93640 0.91909 0.88656 0.89469 0.92104 0.84361 0.93301 0.93237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.91 8.22 71.98 0.59 -4.32 15 2 C 0.18 6.91 1.13 4.50 0.01 6.91 15 3 N -0.74 -35.19 4.99 -299.31 -1.49 -36.69 15 4 C -0.21 -12.10 8.91 84.03 0.75 -11.35 15 5 H 0.06 3.72 7.39 -2.91 -0.02 3.70 15 6 C -0.07 -4.22 5.50 84.86 0.47 -3.75 15 7 N -0.99 -64.77 13.97 21.65 0.30 -64.47 15 8 Si 0.95 47.32 27.73 68.60 1.90 49.23 15 9 H -0.28 -13.45 7.11 99.48 0.71 -12.74 15 10 H -0.30 -15.15 7.11 99.48 0.71 -14.44 15 11 H -0.26 -11.83 6.52 99.48 0.65 -11.19 15 12 C -0.12 -3.60 6.43 31.50 0.20 -3.39 15 13 C 0.04 1.04 7.47 86.45 0.65 1.68 15 14 N -0.68 -21.06 7.62 -500.83 -3.82 -24.88 15 15 C 0.03 1.10 6.62 86.45 0.57 1.67 15 16 H 0.07 2.05 8.10 -2.39 -0.02 2.03 15 17 H 0.03 1.29 7.16 -2.38 -0.02 1.27 15 18 H 0.05 1.82 8.14 -2.39 -0.02 1.81 15 19 H 0.36 16.98 5.17 -92.70 -0.48 16.50 15 20 H 0.25 15.99 8.31 -92.71 -0.77 15.22 15 21 H 0.06 1.93 7.49 -2.39 -0.02 1.91 15 22 H 0.09 2.24 7.71 -2.39 -0.02 2.22 15 23 H 0.09 1.95 8.14 -2.39 -0.02 1.93 15 24 H 0.06 1.21 8.14 -2.38 -0.02 1.19 15 25 H 0.34 8.66 8.92 -89.69 -0.80 7.86 15 26 H 0.05 1.53 7.83 -2.39 -0.02 1.51 15 27 H 0.05 2.23 7.32 -2.39 -0.02 2.21 15 Total: -1.00 -68.31 219.16 -0.05 -68.37 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: -0.18 Total: 21.00 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: 3.23 Total: -12.55 kcal Atomic # 7 Polarization: -121.02 SS G_CDS: -5.01 Total: -126.03 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 1.90 Total: 49.23 kcal Total: -68.31 -0.05 -68.37 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230739841.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.718 kcal (2) G-P(sol) polarization free energy of solvation -68.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds