Wall clock time and date at job start Mon Mar 30 2020 01:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46876 * 110.99625 * 2 1 4 4 C 1.53098 * 109.60029 * 187.10858 * 3 2 1 5 5 C 1.53330 * 109.05268 * 299.42425 * 4 3 2 6 6 N 1.47067 * 108.37025 * 52.41039 * 5 4 3 7 7 C 1.36947 * 120.77777 * 128.45441 * 6 5 4 8 8 H 1.07993 * 119.99611 * 206.82084 * 7 6 5 9 9 C 1.38810 * 120.00011 * 26.81252 * 7 6 5 10 10 N 1.31626 * 119.99703 * 17.08260 * 9 7 6 11 11 Si 1.86799 * 120.00159 * 197.08028 * 9 7 6 12 12 H 1.48496 * 109.46951 * 59.99963 * 11 9 7 13 13 H 1.48497 * 109.47167 * 180.02562 * 11 9 7 14 14 H 1.48506 * 109.46868 * 300.00007 * 11 9 7 15 15 C 1.46962 * 118.44536 * 308.72344 * 6 5 4 16 16 H 1.09000 * 109.47710 * 60.00410 * 1 2 3 17 17 H 1.09003 * 109.47028 * 179.97438 * 1 2 3 18 18 H 1.09000 * 109.47540 * 299.99891 * 1 2 3 19 19 H 1.08995 * 109.45610 * 67.06814 * 3 2 1 20 20 H 1.09005 * 109.43021 * 307.12635 * 3 2 1 21 21 H 1.09001 * 109.53924 * 179.55731 * 4 3 2 22 22 H 1.08993 * 109.61391 * 59.34012 * 4 3 2 23 23 H 1.09000 * 109.68641 * 292.68722 * 5 4 3 24 24 H 1.09011 * 109.71285 * 172.14992 * 5 4 3 25 25 H 0.96999 * 119.99724 * 180.02562 * 10 9 7 26 26 H 1.08997 * 109.57399 * 172.38623 * 15 6 5 27 27 H 1.08991 * 109.58265 * 292.78000 * 15 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3712 0.0000 4 6 3.5155 1.3379 -0.1785 5 6 4.1392 0.5599 0.9863 6 7 3.4645 -0.7429 1.0876 7 6 4.1875 -1.9052 1.1289 8 1 3.7487 -2.8268 0.7761 9 6 5.4843 -1.8987 1.6240 10 7 5.9054 -0.8867 2.3527 11 14 6.6317 -3.3262 1.2562 12 1 6.8091 -3.4527 -0.2127 13 1 7.9493 -3.0794 1.8951 14 1 6.0484 -4.5814 1.7944 15 6 1.9959 -0.7686 1.1374 16 1 -0.3634 0.5138 -0.8900 17 1 -0.3633 -1.0277 -0.0005 18 1 -0.3634 0.5138 0.8900 19 1 1.7515 1.8537 0.9465 20 1 1.5459 1.9321 -0.8196 21 1 3.9040 2.3563 -0.1862 22 1 3.7627 0.8462 -1.1192 23 1 4.0042 1.1165 1.9137 24 1 5.2027 0.4092 0.8001 25 1 6.8116 -0.8820 2.6984 26 1 1.6464 -1.7992 1.0751 27 1 1.6542 -0.3208 2.0704 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231547077.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:12 Heat of formation + Delta-G solvation = 9.667722 kcal Electronic energy + Delta-G solvation = -10298.596018 eV Core-core repulsion = 8477.315173 eV Total energy + Delta-G solvation = -1821.280845 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.56487 -35.94095 -33.33355 -32.36606 -27.70947 -27.28672 -24.15118 -23.81359 -20.84663 -18.72362 -16.98353 -16.28175 -15.92615 -15.49501 -15.41344 -14.91530 -14.26660 -13.53939 -13.19483 -13.05244 -12.85549 -12.64992 -12.39417 -11.99354 -11.81581 -11.55053 -11.39625 -10.61162 -9.29650 -8.73670 -7.91907 -5.36257 1.46786 1.50363 1.57460 2.48791 3.10582 3.29650 3.68331 4.14360 4.21104 4.38022 4.57056 4.65651 4.68374 4.75093 4.87294 4.97751 5.01570 5.09304 5.45317 5.59621 5.66564 6.16731 6.25257 6.39485 7.09333 7.79096 8.32477 9.16484 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.074446 B = 0.014963 C = 0.013502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 376.020431 B = 1870.823069 C = 2073.310964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.574 5.574 3 C 0.068 3.932 4 C -0.131 4.131 5 C 0.172 3.828 6 N -0.606 5.606 7 C -0.266 4.266 8 H 0.067 0.933 9 C -0.051 4.051 10 N -0.936 5.936 11 Si 0.975 3.025 12 H -0.279 1.279 13 H -0.291 1.291 14 H -0.273 1.273 15 C 0.316 3.684 16 H 0.084 0.916 17 H 0.071 0.929 18 H 0.025 0.975 19 H 0.021 0.979 20 H 0.091 0.909 21 H 0.080 0.920 22 H 0.053 0.947 23 H -0.006 1.006 24 H 0.055 0.945 25 H 0.252 0.748 26 H 0.066 0.934 27 H -0.015 1.015 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.194 2.967 -4.492 8.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.302 5.302 3 C -0.060 4.060 4 C -0.170 4.170 5 C 0.046 3.954 6 N -0.330 5.330 7 C -0.396 4.396 8 H 0.085 0.915 9 C -0.246 4.246 10 N -0.582 5.582 11 Si 0.802 3.198 12 H -0.205 1.205 13 H -0.217 1.217 14 H -0.198 1.198 15 C 0.102 3.898 16 H 0.103 0.897 17 H 0.090 0.910 18 H 0.043 0.957 19 H 0.039 0.961 20 H 0.109 0.891 21 H 0.098 0.902 22 H 0.072 0.928 23 H 0.013 0.987 24 H 0.073 0.927 25 H 0.061 0.939 26 H 0.084 0.916 27 H 0.002 0.998 Dipole moment (debyes) X Y Z Total from point charges -6.889 2.738 -4.824 8.845 hybrid contribution 0.535 -0.232 0.916 1.085 sum -6.354 2.506 -3.909 7.870 Atomic orbital electron populations 1.22306 0.85650 1.02520 1.01133 1.62280 1.08853 1.14281 1.44766 1.21940 0.95232 0.88963 0.99908 1.22123 0.95614 1.00022 0.99226 1.20708 0.96852 0.84597 0.93198 1.44342 1.00563 1.03181 1.84922 1.19450 0.96916 0.88544 1.34693 0.91546 1.25828 1.00613 1.00689 0.97478 1.70203 1.17585 1.34123 1.36272 0.85231 0.77704 0.78971 0.77868 1.20473 1.21677 1.19842 1.21405 0.83734 0.96254 0.88389 0.89724 0.91049 0.95673 0.96083 0.89105 0.90191 0.92800 0.98749 0.92661 0.93928 0.91601 0.99767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.90 9.58 127.69 1.22 2.12 15 2 N -0.57 -21.77 5.01 -933.54 -4.68 -26.45 15 3 C 0.07 2.38 5.43 86.34 0.47 2.84 15 4 C -0.13 -5.22 6.27 30.74 0.19 -5.03 15 5 C 0.17 8.82 5.33 86.38 0.46 9.28 15 6 N -0.61 -32.70 3.09 -709.53 -2.19 -34.89 15 7 C -0.27 -15.36 9.61 84.03 0.81 -14.55 15 8 H 0.07 3.73 7.88 -2.91 -0.02 3.71 15 9 C -0.05 -2.92 4.93 84.86 0.42 -2.50 15 10 N -0.94 -56.71 11.16 21.65 0.24 -56.47 15 11 Si 0.98 45.84 29.59 68.60 2.03 47.87 15 12 H -0.28 -12.79 7.11 99.48 0.71 -12.09 15 13 H -0.29 -13.57 7.11 99.48 0.71 -12.86 15 14 H -0.27 -12.31 7.11 99.48 0.71 -11.60 15 15 C 0.32 14.34 6.10 170.58 1.04 15.38 15 16 H 0.08 1.95 8.14 -2.39 -0.02 1.93 15 17 H 0.07 1.86 8.14 -2.39 -0.02 1.84 15 18 H 0.02 0.66 8.14 -2.39 -0.02 0.64 15 19 H 0.02 0.75 8.14 -2.39 -0.02 0.73 15 20 H 0.09 2.59 8.11 -2.38 -0.02 2.57 15 21 H 0.08 2.71 8.14 -2.39 -0.02 2.69 15 22 H 0.05 2.24 8.14 -2.39 -0.02 2.22 15 23 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 15 24 H 0.05 3.16 6.11 -2.38 -0.01 3.14 15 25 H 0.25 14.68 8.31 -92.71 -0.77 13.91 15 26 H 0.07 2.93 7.94 -2.39 -0.02 2.91 15 27 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 15 Total: -1.00 -64.79 220.89 1.13 -63.66 By element: Atomic # 1 Polarization: -2.38 SS G_CDS: 1.12 Total: -1.27 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: 4.61 Total: 7.55 kcal Atomic # 7 Polarization: -111.18 SS G_CDS: -6.63 Total: -117.81 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -64.79 1.13 -63.66 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231547077.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.330 kcal (2) G-P(sol) polarization free energy of solvation -64.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds