Wall clock time and date at job start Mon Mar 30 2020 01:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 110.63854 * 2 1 4 4 C 1.54316 * 110.72327 * 123.14539 * 2 1 3 5 5 N 1.47026 * 107.27365 * 140.55544 * 4 2 1 6 6 C 1.36933 * 125.65326 * 180.79632 * 5 4 2 7 7 H 1.08005 * 119.99541 * 359.97438 * 6 5 4 8 8 C 1.38813 * 120.00564 * 180.02562 * 6 5 4 9 9 N 1.31616 * 119.99514 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00305 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.47209 * 89.99775 * 10 8 6 12 12 H 1.48501 * 109.47422 * 209.99954 * 10 8 6 13 13 H 1.48504 * 109.47192 * 329.99911 * 10 8 6 14 14 C 1.47425 * 108.70074 * 1.05989 * 5 4 2 15 15 C 1.54910 * 104.83231 * 335.87083 * 14 5 4 16 16 H 1.08991 * 111.00552 * 278.93287 * 15 14 5 17 17 N 1.46904 * 111.00351 * 155.08098 * 15 14 5 18 18 H 1.09003 * 109.47103 * 298.30482 * 1 2 3 19 19 H 1.09000 * 109.47385 * 58.30775 * 1 2 3 20 20 H 1.09004 * 109.47258 * 178.30887 * 1 2 3 21 21 H 1.09004 * 109.88447 * 21.14413 * 4 2 1 22 22 H 1.08996 * 110.01243 * 260.04843 * 4 2 1 23 23 H 0.97002 * 119.99999 * 179.97438 * 9 8 6 24 24 H 1.09001 * 110.36478 * 94.71036 * 14 5 4 25 25 H 1.08998 * 110.36859 * 217.03414 * 14 5 4 26 26 H 1.00903 * 110.99729 * 67.80698 * 17 15 14 27 27 H 1.00903 * 111.00169 * 191.75687 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0760 -0.7892 1.2085 5 7 3.2445 -1.5495 0.7414 6 6 4.0070 -2.3911 1.5066 7 1 3.7666 -2.5396 2.5490 8 6 5.0895 -3.0524 0.9429 9 7 5.3827 -2.8709 -0.3273 10 14 6.1300 -4.1998 1.9869 11 1 5.5719 -5.5743 1.9182 12 1 7.5245 -4.2057 1.4763 13 1 6.1208 -3.7317 3.3962 14 6 3.4632 -1.2509 -0.6856 15 6 2.0789 -0.7974 -1.2125 16 1 1.4452 -1.6558 -1.4348 17 7 2.2217 0.0681 -2.3909 18 1 -0.3633 0.4873 0.9048 19 1 -0.3634 0.5399 -0.8744 20 1 -0.3634 -1.0272 -0.0303 21 1 1.3130 -1.4733 1.5799 22 1 2.3735 -0.1011 1.9997 23 1 6.1393 -3.3327 -0.7213 24 1 4.1931 -0.4491 -0.7978 25 1 3.7959 -2.1445 -1.2135 26 1 2.5787 -0.4505 -3.1794 27 1 1.3467 0.5159 -2.6189 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235574476.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:55 Heat of formation + Delta-G solvation = 19.015833 kcal Electronic energy + Delta-G solvation = -10193.739210 eV Core-core repulsion = 8372.863729 eV Total energy + Delta-G solvation = -1820.875480 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -37.83361 -33.51577 -31.78089 -30.26284 -26.82297 -25.42165 -23.11337 -19.90423 -19.20743 -16.81580 -15.33299 -14.74951 -14.60704 -13.68295 -13.09053 -12.72145 -12.50945 -11.93596 -11.69337 -11.09286 -10.97991 -10.72030 -10.28709 -10.14906 -9.88780 -9.70055 -9.33069 -8.61292 -8.12259 -6.75941 -5.59186 -3.01068 3.43247 3.47754 3.50333 4.52781 5.06029 5.32934 5.43931 5.57933 5.61725 5.93355 6.05872 6.18297 6.28009 6.33898 6.46750 6.70787 6.87009 7.04229 7.48862 7.66146 7.85239 7.93847 8.00227 8.42284 9.28233 9.89025 10.55148 11.44281 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.077078 B = 0.014360 C = 0.012481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 363.180655 B = 1949.422668 C = 2242.873796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.101 4.101 3 H 0.077 0.923 4 C 0.140 3.860 5 N -0.606 5.606 6 C -0.221 4.221 7 H 0.078 0.922 8 C -0.014 4.014 9 N -0.922 5.922 10 Si 0.915 3.085 11 H -0.289 1.289 12 H -0.290 1.290 13 H -0.282 1.282 14 C 0.164 3.836 15 C 0.061 3.939 16 H 0.035 0.965 17 N -0.838 5.838 18 H 0.051 0.949 19 H 0.047 0.953 20 H 0.051 0.949 21 H 0.022 0.978 22 H 0.020 0.980 23 H 0.251 0.749 24 H 0.022 0.978 25 H 0.101 0.899 26 H 0.338 0.662 27 H 0.328 0.672 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.279 3.554 -1.692 8.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.120 4.120 3 H 0.096 0.904 4 C 0.013 3.987 5 N -0.332 5.332 6 C -0.350 4.350 7 H 0.095 0.905 8 C -0.209 4.209 9 N -0.571 5.571 10 Si 0.746 3.254 11 H -0.217 1.217 12 H -0.216 1.216 13 H -0.207 1.207 14 C 0.038 3.962 15 C -0.051 4.051 16 H 0.053 0.947 17 N -0.367 5.367 18 H 0.070 0.930 19 H 0.066 0.934 20 H 0.070 0.930 21 H 0.040 0.960 22 H 0.038 0.962 23 H 0.062 0.938 24 H 0.040 0.960 25 H 0.119 0.881 26 H 0.150 0.850 27 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -6.558 3.819 -1.243 7.690 hybrid contribution -0.164 -1.156 0.099 1.171 sum -6.722 2.663 -1.144 7.321 Atomic orbital electron populations 1.21764 0.95851 1.01232 1.00755 1.22193 0.94120 0.99675 0.96009 0.90435 1.21347 0.90115 0.93049 0.94150 1.44448 1.30762 1.50530 1.07466 1.19102 1.06210 1.16863 0.92796 0.90459 1.24810 0.98820 1.00805 0.96488 1.69819 1.30091 1.46292 1.10872 0.86056 0.79594 0.80629 0.79134 1.21656 1.21650 1.20743 1.21852 0.89394 1.00366 0.84542 1.22954 1.00421 0.92430 0.89257 0.94741 1.58639 1.33193 1.36659 1.08202 0.92989 0.93390 0.92971 0.96007 0.96191 0.93807 0.96030 0.88087 0.84972 0.86116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.13 37.16 0.34 -1.72 15 2 C -0.10 -1.90 3.21 -88.79 -0.28 -2.18 15 3 H 0.08 1.48 8.14 -51.93 -0.42 1.06 15 4 C 0.14 3.13 6.84 -3.07 -0.02 3.11 15 5 N -0.61 -16.44 3.39 -170.07 -0.58 -17.02 15 6 C -0.22 -6.42 10.27 -15.06 -0.15 -6.58 15 7 H 0.08 2.16 7.83 -52.48 -0.41 1.74 15 8 C -0.01 -0.41 5.49 -17.43 -0.10 -0.50 15 9 N -0.92 -27.70 10.09 55.49 0.56 -27.14 15 10 Si 0.92 22.59 29.55 -169.99 -5.02 17.56 15 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 15 12 H -0.29 -7.20 7.11 56.52 0.40 -6.80 15 13 H -0.28 -6.78 7.11 56.52 0.40 -6.38 15 14 C 0.16 4.22 5.58 -2.53 -0.01 4.21 15 15 C 0.06 1.24 3.64 -65.56 -0.24 1.00 15 16 H 0.03 0.71 8.04 -51.93 -0.42 0.29 15 17 N -0.84 -14.19 9.38 -2.85 -0.03 -14.22 15 18 H 0.05 0.70 8.14 -51.93 -0.42 0.28 15 19 H 0.05 0.62 8.14 -51.93 -0.42 0.20 15 20 H 0.05 0.78 8.13 -51.93 -0.42 0.36 15 21 H 0.02 0.48 7.82 -51.93 -0.41 0.07 15 22 H 0.02 0.45 8.14 -51.93 -0.42 0.02 15 23 H 0.25 7.29 8.31 -40.82 -0.34 6.95 15 24 H 0.02 0.61 8.14 -51.93 -0.42 0.19 15 25 H 0.10 2.89 5.87 -51.93 -0.30 2.58 15 26 H 0.34 5.34 9.08 -39.29 -0.36 4.98 15 27 H 0.33 4.62 9.03 -39.29 -0.35 4.26 15 LS Contribution 222.72 15.07 3.36 3.36 Total: -1.00 -30.88 222.72 -6.10 -36.98 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -3.92 Total: 3.14 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: -0.47 Total: -2.66 kcal Atomic # 7 Polarization: -58.34 SS G_CDS: -0.04 Total: -58.38 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 3.36 Total: 3.36 kcal Total: -30.88 -6.10 -36.98 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235574476.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.998 kcal (2) G-P(sol) polarization free energy of solvation -30.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds