Wall clock time and date at job start Mon Mar 30 2020 02:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48501 * 109.47364 * 179.72223 * 3 2 1 5 5 H 1.48508 * 109.46883 * 299.72346 * 3 2 1 6 6 H 1.48497 * 109.46870 * 59.72156 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.07999 * 120.00052 * 180.28126 * 7 2 1 9 9 C 1.50696 * 119.99746 * 0.27650 * 7 2 1 10 10 C 1.53002 * 109.46919 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.50516 * 304.91022 * 10 9 7 12 12 C 1.53101 * 109.50796 * 184.78283 * 10 9 7 13 13 O 1.43015 * 109.25823 * 183.21593 * 12 10 9 14 14 C 1.43015 * 113.73838 * 58.66849 * 13 12 10 15 15 C 1.53094 * 109.25975 * 301.32980 * 14 13 12 16 16 N 1.47008 * 109.26088 * 56.84799 * 15 14 13 17 17 H 0.97001 * 120.00651 * 179.97438 * 1 2 3 18 18 H 1.09000 * 109.47319 * 299.99477 * 9 7 2 19 19 H 1.08999 * 109.47742 * 60.00602 * 9 7 2 20 20 H 1.08996 * 109.50358 * 303.14827 * 12 10 9 21 21 H 1.08995 * 109.50822 * 63.27698 * 12 10 9 22 22 H 1.08999 * 109.50405 * 181.39191 * 14 13 12 23 23 H 1.09002 * 109.54512 * 61.28734 * 14 13 12 24 24 H 1.08996 * 109.50528 * 296.91239 * 15 14 13 25 25 H 1.09003 * 109.50757 * 176.78322 * 15 14 13 26 26 H 1.00899 * 111.00439 * 177.60426 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7093 1.3462 0.0068 5 1 1.8957 2.3934 -1.2159 6 1 1.8855 2.3993 1.2091 7 6 2.0045 -1.1941 0.0058 8 1 3.0845 -1.1942 0.0104 9 6 1.2508 -2.4991 0.0058 10 6 2.2450 -3.6621 0.0134 11 1 2.9323 -3.5589 -0.8263 12 6 1.4846 -4.9855 -0.1069 13 8 2.4116 -6.0714 -0.0239 14 6 3.1669 -6.0920 1.1904 15 6 3.9443 -4.7799 1.3238 16 7 3.0035 -3.6514 1.2727 17 1 -0.4851 -0.8400 -0.0004 18 1 0.6205 -2.5547 0.8933 19 1 0.6280 -2.5591 -0.8867 20 1 0.7593 -5.0634 0.7030 21 1 0.9664 -5.0218 -1.0651 22 1 3.8654 -6.9285 1.1703 23 1 2.4911 -6.2024 2.0384 24 1 4.6589 -4.6953 0.5051 25 1 4.4766 -4.7672 2.2750 26 1 3.4847 -2.7734 1.3976 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238546116.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:24 Heat of formation + Delta-G solvation = -82.998390 kcal Electronic energy + Delta-G solvation = -10164.303765 eV Core-core repulsion = 8241.285954 eV Total energy + Delta-G solvation = -1923.017811 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.38267 -36.58663 -34.91461 -32.91435 -28.96079 -27.45456 -25.24504 -23.30928 -21.18373 -18.94273 -17.86639 -17.01971 -16.14108 -15.93379 -15.64424 -15.27905 -14.83236 -14.59416 -13.46270 -13.28084 -12.95945 -12.52803 -12.16656 -11.94825 -11.82348 -11.57519 -10.97311 -10.56244 -10.46706 -9.40770 -8.68140 -6.38059 1.52682 1.62232 1.77495 2.56035 2.84442 3.10512 3.29037 3.92689 4.08085 4.14187 4.23173 4.30061 4.55130 4.66398 4.73667 4.87600 4.94042 5.14923 5.31879 5.91360 6.03280 6.15544 6.16668 6.39127 6.58210 7.42601 8.73081 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.084196 B = 0.012084 C = 0.010997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 332.478927 B = 2316.563248 C = 2545.477206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.038 4.038 3 Si 1.124 2.876 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.279 1.279 7 C -0.606 4.606 8 H 0.049 0.951 9 C 0.020 3.980 10 C 0.074 3.926 11 H 0.020 0.980 12 C 0.073 3.927 13 O -0.402 6.402 14 C 0.059 3.941 15 C 0.016 3.984 16 N -0.688 5.688 17 H 0.256 0.744 18 H -0.003 1.003 19 H -0.004 1.004 20 H 0.053 0.947 21 H 0.099 0.901 22 H 0.126 0.874 23 H 0.058 0.942 24 H 0.030 0.970 25 H 0.106 0.894 26 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.277 -8.310 2.154 11.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.235 4.235 3 Si 0.945 3.055 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.205 1.205 7 C -0.644 4.644 8 H 0.067 0.933 9 C -0.017 4.017 10 C -0.036 4.036 11 H 0.038 0.962 12 C -0.004 4.004 13 O -0.321 6.321 14 C -0.018 4.018 15 C -0.113 4.113 16 N -0.322 5.322 17 H 0.066 0.934 18 H 0.016 0.984 19 H 0.014 0.986 20 H 0.071 0.929 21 H 0.117 0.883 22 H 0.144 0.856 23 H 0.076 0.924 24 H 0.048 0.952 25 H 0.124 0.876 26 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 6.629 -7.168 2.365 10.046 hybrid contribution 0.479 -1.056 -0.495 1.261 sum 7.108 -8.224 1.870 11.030 Atomic orbital electron populations 1.70852 1.07992 1.29951 1.48854 1.27377 0.96589 1.06774 0.92807 0.82843 0.74196 0.71040 0.77394 1.19456 1.20655 1.20529 1.22318 0.94292 0.92986 1.54827 0.93250 1.19105 0.94548 0.93525 0.94567 1.21904 0.95777 0.95703 0.90246 0.96152 1.22688 0.90950 0.84482 1.02253 1.87892 1.54840 1.48562 1.40805 1.22889 0.94873 0.97405 0.86622 1.22748 0.94210 0.92038 1.02289 1.60582 1.29502 1.07030 1.35079 0.93444 0.98447 0.98556 0.92898 0.88299 0.85648 0.92377 0.95178 0.87609 0.83295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.37 13.65 21.45 0.29 -58.08 15 2 C -0.04 -2.20 5.46 84.66 0.46 -1.74 15 3 Si 1.12 50.31 29.90 68.60 2.05 52.36 15 4 H -0.27 -11.06 7.11 99.48 0.71 -10.35 15 5 H -0.28 -12.21 7.11 99.48 0.71 -11.50 15 6 H -0.28 -12.14 7.11 99.48 0.71 -11.43 15 7 C -0.61 -34.20 8.45 25.60 0.22 -33.98 15 8 H 0.05 2.70 7.16 -2.91 -0.02 2.68 15 9 C 0.02 1.04 3.97 29.85 0.12 1.16 15 10 C 0.07 3.20 2.64 44.93 0.12 3.32 15 11 H 0.02 0.93 8.14 -2.39 -0.02 0.91 15 12 C 0.07 2.74 6.29 72.02 0.45 3.19 15 13 O -0.40 -13.81 10.83 -148.98 -1.61 -15.42 15 14 C 0.06 1.61 7.01 72.01 0.50 2.12 15 15 C 0.02 0.49 6.76 86.31 0.58 1.07 15 16 N -0.69 -26.91 6.55 -490.71 -3.22 -30.13 15 17 H 0.26 16.13 7.22 -92.71 -0.67 15.46 15 18 H 0.00 -0.16 8.00 -2.39 -0.02 -0.18 15 19 H 0.00 -0.21 8.01 -2.39 -0.02 -0.23 15 20 H 0.05 1.97 8.14 -2.39 -0.02 1.95 15 21 H 0.10 3.47 8.14 -2.39 -0.02 3.45 15 22 H 0.13 2.54 8.14 -2.39 -0.02 2.52 15 23 H 0.06 1.57 8.14 -2.39 -0.02 1.55 15 24 H 0.03 0.91 8.14 -2.39 -0.02 0.89 15 25 H 0.11 2.53 8.14 -2.39 -0.02 2.52 15 26 H 0.35 14.25 7.57 -89.69 -0.68 13.57 15 Total: -1.00 -64.84 217.79 0.55 -64.30 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: 0.58 Total: 11.83 kcal Atomic # 6 Polarization: -27.31 SS G_CDS: 2.46 Total: -24.86 kcal Atomic # 7 Polarization: -85.28 SS G_CDS: -2.92 Total: -88.20 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: -1.61 Total: -15.42 kcal Atomic # 14 Polarization: 50.31 SS G_CDS: 2.05 Total: 52.36 kcal Total: -64.84 0.55 -64.30 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238546116.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.703 kcal (2) G-P(sol) polarization free energy of solvation -64.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds