Wall clock time and date at job start Mon Mar 30 2020 01:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99785 * 2 1 4 4 H 1.48500 * 109.46959 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47257 * 299.99795 * 3 2 1 6 6 H 1.48494 * 109.47269 * 60.00057 * 3 2 1 7 7 C 1.37878 * 119.99958 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99851 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00129 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.57586 * 300.15928 * 9 7 2 11 11 C 1.53123 * 109.52430 * 60.31537 * 9 7 2 12 12 C 1.53034 * 109.27909 * 177.55764 * 11 9 7 13 13 N 1.46847 * 109.52616 * 300.82043 * 12 11 9 14 14 C 1.46848 * 111.19556 * 61.74332 * 13 12 11 15 15 C 1.53042 * 109.52160 * 298.25623 * 14 13 12 16 16 H 1.08998 * 109.50580 * 299.24058 * 15 14 13 17 17 N 1.46899 * 109.49933 * 179.16043 * 15 14 13 18 18 H 0.97001 * 120.00139 * 359.97438 * 1 2 3 19 19 H 1.08998 * 109.50042 * 297.50029 * 11 9 7 20 20 H 1.09004 * 109.50141 * 57.58042 * 11 9 7 21 21 H 1.09000 * 109.46034 * 180.80612 * 12 11 9 22 22 H 1.09004 * 109.46172 * 60.83746 * 12 11 9 23 23 H 1.00901 * 110.99839 * 297.64822 * 13 12 11 24 24 H 1.08995 * 109.46326 * 58.27554 * 14 13 12 25 25 H 1.08993 * 109.45984 * 178.25629 * 14 13 12 26 26 H 1.00904 * 111.00352 * 60.00547 * 17 15 14 27 27 H 1.00906 * 110.99591 * 183.96005 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6213 -2.5572 0.8882 11 6 0.3768 -2.5853 -1.2536 12 6 -0.3388 -3.9377 -1.2787 13 7 0.6549 -5.0189 -1.2779 14 6 1.4753 -4.9851 -0.0604 15 6 2.2451 -3.6638 0.0011 16 1 2.9002 -3.5836 -0.8664 17 7 3.0501 -3.6220 1.2292 18 1 -0.4850 0.8400 0.0004 19 1 -0.3612 -1.7833 -1.2384 20 1 1.0024 -2.4874 -2.1408 21 1 -0.9511 -4.0080 -2.1778 22 1 -0.9749 -4.0285 -0.3982 23 1 1.2325 -4.9797 -2.1043 24 1 0.8307 -5.0710 0.8143 25 1 2.1807 -5.8159 -0.0747 26 1 3.7120 -4.3832 1.2538 27 1 3.5176 -2.7330 1.3249 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000257913029.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:57 Heat of formation + Delta-G solvation = -35.272489 kcal Electronic energy + Delta-G solvation = -10317.423851 eV Core-core repulsion = 8494.194252 eV Total energy + Delta-G solvation = -1823.229599 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.77596 -35.22161 -34.49943 -31.73460 -29.09725 -27.05641 -23.70702 -22.76672 -20.83520 -18.50855 -17.07892 -16.33446 -16.10983 -15.76833 -15.15777 -15.08559 -13.86420 -13.51925 -13.14634 -12.99134 -12.73797 -12.48880 -12.45576 -12.12163 -11.53108 -11.18105 -10.85230 -10.51545 -9.44429 -9.21237 -8.08063 -6.23799 1.37318 1.39547 1.49562 2.40454 3.15838 3.46128 3.90882 4.14643 4.41699 4.46968 4.63014 4.68870 4.75999 5.01282 5.16261 5.25514 5.40284 5.57102 5.88623 5.91627 6.14376 6.30775 6.49990 6.56011 6.85941 6.87056 7.43847 8.94265 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.060612 B = 0.016852 C = 0.014039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.845919 B = 1661.076705 C = 1993.943879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.011 3.989 3 Si 0.954 3.046 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.524 4.524 8 H 0.051 0.949 9 C 0.054 3.946 10 H -0.009 1.009 11 C -0.138 4.138 12 C 0.062 3.938 13 N -0.677 5.677 14 C 0.071 3.929 15 C 0.071 3.929 16 H 0.014 0.986 17 N -0.843 5.843 18 H 0.259 0.741 19 H 0.063 0.937 20 H 0.029 0.971 21 H 0.080 0.920 22 H 0.053 0.947 23 H 0.342 0.658 24 H 0.059 0.941 25 H 0.086 0.914 26 H 0.339 0.661 27 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.670 -5.917 -2.166 7.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.188 4.188 3 Si 0.780 3.220 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.563 4.563 8 H 0.069 0.931 9 C 0.036 3.964 10 H 0.009 0.991 11 C -0.178 4.178 12 C -0.068 4.068 13 N -0.305 5.305 14 C -0.059 4.059 15 C -0.042 4.042 16 H 0.032 0.968 17 N -0.374 5.374 18 H 0.068 0.932 19 H 0.081 0.919 20 H 0.048 0.952 21 H 0.098 0.902 22 H 0.071 0.929 23 H 0.159 0.841 24 H 0.077 0.923 25 H 0.105 0.895 26 H 0.152 0.848 27 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.381 -6.387 -1.534 6.987 hybrid contribution 1.594 2.183 -0.688 2.789 sum 3.975 -4.204 -2.222 6.198 Atomic orbital electron populations 1.70030 1.07192 1.26935 1.51515 1.25733 0.95653 1.02360 0.95008 0.85572 0.79073 0.79950 0.77410 1.19121 1.20839 1.20888 1.21462 0.92673 0.92056 1.50083 0.93118 1.18636 0.92751 0.92025 0.93025 0.99072 1.22141 0.99852 0.97970 0.97813 1.21994 0.94567 0.88782 1.01431 1.60882 1.18550 1.46137 1.04911 1.21957 0.95643 0.95243 0.93058 1.22065 0.94910 0.97263 0.89965 0.96847 1.58625 1.30862 1.08457 1.39443 0.93155 0.91868 0.95191 0.90207 0.92854 0.84109 0.92276 0.89547 0.84829 0.84412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.42 11.37 21.45 0.24 -53.17 15 2 C 0.01 0.61 5.31 84.65 0.45 1.05 15 3 Si 0.95 43.73 29.54 68.60 2.03 45.75 15 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 15 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 15 6 H -0.28 -12.85 7.11 99.48 0.71 -12.14 15 7 C -0.52 -28.59 7.88 25.60 0.20 -28.39 15 8 H 0.05 2.69 7.01 -2.91 -0.02 2.67 15 9 C 0.05 2.74 1.87 -11.46 -0.02 2.72 15 10 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 15 11 C -0.14 -6.49 5.11 30.65 0.16 -6.33 15 12 C 0.06 2.38 6.55 86.32 0.57 2.95 15 13 N -0.68 -22.99 6.87 -514.01 -3.53 -26.52 15 14 C 0.07 2.50 6.13 86.33 0.53 3.03 15 15 C 0.07 2.88 2.84 44.97 0.13 3.01 15 16 H 0.01 0.56 8.14 -2.39 -0.02 0.54 15 17 N -0.84 -31.51 9.24 -168.46 -1.56 -33.07 15 18 H 0.26 14.39 8.31 -92.71 -0.77 13.62 15 19 H 0.06 3.40 6.17 -2.39 -0.01 3.39 15 20 H 0.03 1.39 8.14 -2.38 -0.02 1.37 15 21 H 0.08 2.71 8.14 -2.39 -0.02 2.69 15 22 H 0.05 2.17 8.14 -2.38 -0.02 2.15 15 23 H 0.34 10.53 8.86 -89.69 -0.79 9.73 15 24 H 0.06 2.26 8.14 -2.39 -0.02 2.24 15 25 H 0.09 2.52 8.14 -2.39 -0.02 2.50 15 26 H 0.34 10.08 9.04 -89.69 -0.81 9.27 15 27 H 0.34 13.55 7.54 -89.69 -0.68 12.87 15 Total: -1.00 -59.79 217.93 -1.91 -61.70 By element: Atomic # 1 Polarization: 28.36 SS G_CDS: -1.10 Total: 27.25 kcal Atomic # 6 Polarization: -23.96 SS G_CDS: 2.01 Total: -21.95 kcal Atomic # 7 Polarization: -107.91 SS G_CDS: -4.84 Total: -112.76 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Total: -59.79 -1.91 -61.70 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257913029.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.430 kcal (2) G-P(sol) polarization free energy of solvation -59.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds