Wall clock time and date at job start Mon Mar 30 2020 01:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00121 * 2 1 4 4 H 1.48502 * 109.47444 * 270.00365 * 3 2 1 5 5 H 1.48505 * 109.46736 * 30.00343 * 3 2 1 6 6 H 1.48496 * 109.46835 * 150.00236 * 3 2 1 7 7 C 1.37876 * 119.99743 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00597 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99713 * 179.97438 * 7 2 1 10 10 H 1.08999 * 109.58105 * 59.83785 * 9 7 2 11 11 C 1.53124 * 109.52411 * 299.67765 * 9 7 2 12 12 C 1.53035 * 109.27794 * 182.44305 * 11 9 7 13 13 N 1.46844 * 109.52494 * 59.18054 * 12 11 9 14 14 C 1.46854 * 111.19703 * 298.25280 * 13 12 11 15 15 C 1.53037 * 109.51886 * 61.74789 * 14 13 12 16 16 H 1.09002 * 109.53848 * 60.77851 * 15 14 13 17 17 N 1.46899 * 109.50199 * 180.87939 * 15 14 13 18 18 H 0.97005 * 119.99725 * 359.97438 * 1 2 3 19 19 H 1.08999 * 109.50059 * 302.38251 * 11 9 7 20 20 H 1.08993 * 109.49981 * 62.49898 * 11 9 7 21 21 H 1.09002 * 109.46466 * 299.16376 * 12 11 9 22 22 H 1.09002 * 109.45306 * 179.19059 * 12 11 9 23 23 H 1.00899 * 111.00532 * 62.35261 * 13 12 11 24 24 H 1.08994 * 109.46310 * 301.73015 * 14 13 12 25 25 H 1.09004 * 109.45281 * 181.75170 * 14 13 12 26 26 H 1.00899 * 111.00216 * 299.79871 * 17 15 14 27 27 H 1.00904 * 110.99828 * 63.75111 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 1 3.8771 -0.6783 0.8868 11 6 4.0227 -0.4792 -1.2550 12 6 5.5518 -0.5358 -1.2808 13 7 5.9912 -1.9369 -1.2810 14 6 5.5523 -2.6312 -0.0636 15 6 4.0232 -2.6373 -0.0015 16 1 3.6253 -3.1642 -0.8688 17 7 3.5849 -3.3133 1.2268 18 1 -0.4850 0.8401 0.0004 19 1 3.6254 -0.9721 -2.1423 20 1 3.6972 0.5608 -1.2391 21 1 5.9488 -0.0307 -0.4002 22 1 5.9183 -0.0401 -2.1798 23 1 5.6682 -2.4171 -2.1075 24 1 5.9493 -2.1163 0.8112 25 1 5.9193 -3.6575 -0.0787 26 1 3.9105 -4.2681 1.2500 27 1 3.8884 -2.8079 2.0457 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000257913034.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:59 Heat of formation + Delta-G solvation = -28.733120 kcal Electronic energy + Delta-G solvation = -10383.289284 eV Core-core repulsion = 8560.343253 eV Total energy + Delta-G solvation = -1822.946030 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -40.01963 -35.12074 -34.60854 -32.50588 -29.19702 -26.78801 -23.78204 -22.94599 -21.11236 -18.79501 -17.20670 -16.70560 -16.20978 -15.60527 -15.24631 -14.87990 -14.64271 -14.10122 -13.34287 -13.07740 -12.64094 -12.43652 -12.28433 -11.70862 -11.60347 -11.40761 -10.96961 -10.65136 -10.07369 -8.79675 -8.24038 -6.24286 1.27577 1.33487 1.43449 2.33593 3.09126 3.37775 3.92058 3.94515 4.22322 4.28645 4.43266 4.50041 4.59300 4.77104 4.91555 5.06936 5.10490 5.29138 5.66203 5.72128 5.98941 6.34774 6.48404 6.54678 6.82118 6.87941 7.38257 8.93592 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.051335 B = 0.020854 C = 0.016277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.310080 B = 1342.337082 C = 1719.809372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C 0.000 4.000 3 Si 0.951 3.049 4 H -0.268 1.268 5 H -0.304 1.304 6 H -0.249 1.249 7 C -0.487 4.487 8 H 0.033 0.967 9 C 0.020 3.980 10 H 0.016 0.984 11 C -0.157 4.157 12 C 0.060 3.940 13 N -0.676 5.676 14 C 0.033 3.967 15 C 0.082 3.918 16 H 0.054 0.946 17 N -0.843 5.843 18 H 0.261 0.739 19 H 0.054 0.946 20 H 0.039 0.961 21 H 0.066 0.934 22 H 0.090 0.910 23 H 0.345 0.655 24 H 0.067 0.933 25 H 0.088 0.912 26 H 0.343 0.657 27 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.024 -2.021 -1.198 13.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.195 4.195 3 Si 0.779 3.221 4 H -0.194 1.194 5 H -0.232 1.232 6 H -0.173 1.173 7 C -0.525 4.525 8 H 0.051 0.949 9 C 0.001 3.999 10 H 0.034 0.966 11 C -0.197 4.197 12 C -0.070 4.070 13 N -0.305 5.305 14 C -0.099 4.099 15 C -0.031 4.031 16 H 0.072 0.928 17 N -0.373 5.373 18 H 0.070 0.930 19 H 0.073 0.927 20 H 0.057 0.943 21 H 0.085 0.915 22 H 0.108 0.892 23 H 0.163 0.837 24 H 0.085 0.915 25 H 0.107 0.893 26 H 0.156 0.844 27 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 12.786 -1.660 -1.211 12.950 hybrid contribution -0.520 0.629 0.089 0.821 sum 12.266 -1.031 -1.122 12.360 Atomic orbital electron populations 1.70079 1.08230 1.27507 1.54112 1.25932 0.95441 1.02940 0.95208 0.85810 0.78898 0.78966 0.78414 1.19406 1.23181 1.17328 1.21249 0.91323 0.92526 1.47436 0.94914 1.19161 0.93962 0.93254 0.93541 0.96588 1.22630 0.97627 0.99606 0.99814 1.22052 0.91661 0.90543 1.02752 1.60767 1.61904 1.02692 1.05103 1.22921 0.93519 0.99630 0.93818 1.21968 0.93442 0.94841 0.92878 0.92779 1.58521 1.68785 1.06058 1.03913 0.92999 0.92709 0.94259 0.91517 0.89214 0.83709 0.91492 0.89330 0.84381 0.84759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.87 13.96 21.45 0.30 -61.57 15 2 C 0.00 -0.01 5.45 84.65 0.46 0.45 15 3 Si 0.95 45.99 24.37 68.60 1.67 47.66 15 4 H -0.27 -12.27 6.89 99.48 0.69 -11.59 15 5 H -0.30 -14.82 7.11 99.48 0.71 -14.11 15 6 H -0.25 -11.11 6.53 99.48 0.65 -10.46 15 7 C -0.49 -28.17 8.82 25.60 0.23 -27.95 15 8 H 0.03 2.15 7.98 -2.91 -0.02 2.13 15 9 C 0.02 0.91 1.39 -11.46 -0.02 0.89 15 10 H 0.02 0.75 7.19 -2.39 -0.02 0.74 15 11 C -0.16 -6.31 4.82 30.65 0.15 -6.16 15 12 C 0.06 1.85 6.55 86.33 0.57 2.42 15 13 N -0.68 -19.03 6.87 -514.00 -3.53 -22.56 15 14 C 0.03 0.95 6.13 86.32 0.53 1.48 15 15 C 0.08 3.04 2.76 44.97 0.12 3.16 15 16 H 0.05 2.17 8.14 -2.39 -0.02 2.15 15 17 N -0.84 -29.98 8.90 -168.45 -1.50 -31.48 15 18 H 0.26 15.87 8.31 -92.70 -0.77 15.10 15 19 H 0.05 2.24 8.14 -2.39 -0.02 2.22 15 20 H 0.04 1.68 3.38 -2.39 -0.01 1.67 15 21 H 0.07 2.08 8.14 -2.39 -0.02 2.06 15 22 H 0.09 2.38 8.14 -2.39 -0.02 2.36 15 23 H 0.35 8.98 8.86 -89.69 -0.79 8.19 15 24 H 0.07 1.92 8.14 -2.39 -0.02 1.91 15 25 H 0.09 2.12 8.14 -2.38 -0.02 2.10 15 26 H 0.34 9.68 9.04 -89.69 -0.81 8.87 15 27 H 0.34 11.42 8.98 -89.69 -0.81 10.61 15 Total: -1.00 -67.40 213.13 -2.33 -69.72 By element: Atomic # 1 Polarization: 25.23 SS G_CDS: -1.30 Total: 23.93 kcal Atomic # 6 Polarization: -27.75 SS G_CDS: 2.04 Total: -25.71 kcal Atomic # 7 Polarization: -110.88 SS G_CDS: -4.73 Total: -115.61 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 1.67 Total: 47.66 kcal Total: -67.40 -2.33 -69.72 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257913034.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.990 kcal (2) G-P(sol) polarization free energy of solvation -67.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds