Wall clock time and date at job start Mon Mar 30 2020 01:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86809 * 119.99857 * 2 1 4 4 H 1.48501 * 109.46868 * 240.00034 * 3 2 1 5 5 H 1.48496 * 109.46843 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46761 * 120.00100 * 3 2 1 7 7 C 1.37875 * 120.00015 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99609 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00032 * 0.02562 * 7 2 1 10 10 H 1.08993 * 109.57437 * 59.83875 * 9 7 2 11 11 C 1.53118 * 109.51826 * 299.67768 * 9 7 2 12 12 C 1.53039 * 109.27641 * 182.44058 * 11 9 7 13 13 N 1.46843 * 109.52055 * 59.18353 * 12 11 9 14 14 C 1.46840 * 111.20110 * 298.25406 * 13 12 11 15 15 C 1.53042 * 109.52220 * 61.74300 * 14 13 12 16 16 H 1.09002 * 109.50537 * 180.88193 * 15 14 13 17 17 N 1.46904 * 109.53570 * 60.78216 * 15 14 13 18 18 H 0.97001 * 120.00022 * 359.97438 * 1 2 3 19 19 H 1.08993 * 109.50899 * 302.38292 * 11 9 7 20 20 H 1.09009 * 109.50124 * 62.50672 * 11 9 7 21 21 H 1.09006 * 109.46331 * 179.19938 * 12 11 9 22 22 H 1.09002 * 109.46364 * 299.17772 * 12 11 9 23 23 H 1.00900 * 111.00356 * 62.35808 * 13 12 11 24 24 H 1.09004 * 109.46461 * 301.72979 * 14 13 12 25 25 H 1.09002 * 109.46704 * 181.75905 * 14 13 12 26 26 H 1.00905 * 110.99892 * 60.09524 * 17 15 14 27 27 H 1.00898 * 111.00243 * 184.05562 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 1 0.6220 -2.5568 -0.8899 11 6 0.3759 -2.5858 1.2518 12 6 -0.3398 -3.9383 1.2758 13 7 0.6540 -5.0193 1.2752 14 6 1.4752 -4.9851 0.0584 15 6 2.2450 -3.6638 -0.0021 16 1 2.8425 -3.6321 -0.9133 17 7 3.1278 -3.5557 1.1672 18 1 -0.4850 0.8401 0.0004 19 1 1.0010 -2.4890 2.1394 20 1 -0.3622 -1.7837 1.2364 21 1 -0.9528 -4.0089 2.1744 22 1 -0.9751 -4.0287 0.3948 23 1 1.2310 -4.9806 2.1021 24 1 0.8312 -5.0706 -0.8169 25 1 2.1805 -5.8161 0.0726 26 1 3.7924 -4.3145 1.1899 27 1 3.5975 -2.6629 1.1843 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000257913036.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:01 Heat of formation + Delta-G solvation = -11.246505 kcal Electronic energy + Delta-G solvation = -10399.806741 eV Core-core repulsion = 8577.618987 eV Total energy + Delta-G solvation = -1822.187754 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.09076 -33.18545 -32.39578 -29.74396 -27.62929 -25.11123 -21.79970 -21.30502 -18.52116 -16.39681 -15.48390 -14.50802 -14.29267 -13.93149 -13.43913 -13.06108 -11.89564 -11.84381 -11.40370 -11.16162 -10.83254 -10.74769 -10.62392 -10.05269 -9.57919 -9.28733 -8.88145 -8.37835 -7.82648 -7.35125 -5.97538 -4.05516 3.29435 3.34735 3.36395 4.41617 5.15221 5.29031 5.56436 5.87107 5.97973 6.14577 6.44088 6.49894 6.57419 6.65698 6.91048 7.23670 7.44828 7.53711 7.81985 7.90086 8.11754 8.15096 8.26459 8.36311 8.45914 8.95200 9.58288 11.06456 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.069139 B = 0.016520 C = 0.014476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.885350 B = 1694.554126 C = 1933.706077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.890 3.110 4 H -0.279 1.279 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.511 4.511 8 H 0.049 0.951 9 C 0.058 3.942 10 H 0.024 0.976 11 C -0.133 4.133 12 C 0.053 3.947 13 N -0.684 5.684 14 C 0.066 3.934 15 C 0.059 3.941 16 H 0.017 0.983 17 N -0.837 5.837 18 H 0.260 0.740 19 H 0.046 0.954 20 H 0.085 0.915 21 H 0.052 0.948 22 H 0.055 0.945 23 H 0.341 0.659 24 H 0.064 0.936 25 H 0.053 0.947 26 H 0.315 0.685 27 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.775 -5.210 1.174 6.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.205 1.205 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.549 4.549 8 H 0.068 0.932 9 C 0.039 3.961 10 H 0.042 0.958 11 C -0.173 4.173 12 C -0.076 4.076 13 N -0.312 5.312 14 C -0.065 4.065 15 C -0.054 4.054 16 H 0.035 0.965 17 N -0.368 5.368 18 H 0.070 0.930 19 H 0.065 0.935 20 H 0.103 0.897 21 H 0.071 0.929 22 H 0.074 0.926 23 H 0.158 0.842 24 H 0.082 0.918 25 H 0.072 0.928 26 H 0.125 0.875 27 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 1.481 -5.623 1.341 5.968 hybrid contribution 1.867 1.928 -0.603 2.750 sum 3.348 -3.695 0.738 5.041 Atomic orbital electron populations 1.69878 1.05839 1.26425 1.50498 1.24944 0.94833 0.98931 0.95152 0.86705 0.79629 0.83457 0.78438 1.20502 1.21303 1.20339 1.21021 0.92342 0.90813 1.50758 0.93234 1.18665 0.92168 0.90843 0.94382 0.95841 1.22088 1.00024 0.95831 0.99334 1.22083 0.94331 0.91199 1.00018 1.60858 1.18604 1.46904 1.04882 1.21953 0.95255 0.95449 0.93811 1.22152 0.95275 0.97861 0.90099 0.96517 1.58696 1.25872 1.07370 1.44853 0.93001 0.93505 0.89677 0.92948 0.92623 0.84226 0.91780 0.92849 0.87523 0.83609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.42 11.37 55.43 0.63 -24.79 15 2 C 0.06 1.73 5.31 -17.82 -0.09 1.64 15 3 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 15 4 H -0.28 -6.62 7.11 56.52 0.40 -6.21 15 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 15 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 7 C -0.51 -13.79 7.88 -34.44 -0.27 -14.06 15 8 H 0.05 1.30 6.69 -52.48 -0.35 0.95 15 9 C 0.06 1.45 1.99 -91.65 -0.18 1.26 15 10 H 0.02 0.65 8.14 -51.93 -0.42 0.23 15 11 C -0.13 -3.20 4.94 -26.65 -0.13 -3.33 15 12 C 0.05 1.09 6.55 -3.84 -0.03 1.07 15 13 N -0.68 -12.92 6.85 -113.82 -0.78 -13.70 15 14 C 0.07 1.23 6.22 -3.84 -0.02 1.20 15 15 C 0.06 1.22 3.11 -67.63 -0.21 1.01 15 16 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 15 17 N -0.84 -15.69 8.00 -4.59 -0.04 -15.72 15 18 H 0.26 7.15 8.31 -40.82 -0.34 6.81 15 19 H 0.05 1.16 7.73 -51.93 -0.40 0.76 15 20 H 0.08 2.29 6.17 -51.92 -0.32 1.97 15 21 H 0.05 1.00 8.14 -51.93 -0.42 0.58 15 22 H 0.06 1.17 8.14 -51.93 -0.42 0.74 15 23 H 0.34 6.33 8.31 -39.29 -0.33 6.00 15 24 H 0.06 1.20 8.14 -51.93 -0.42 0.78 15 25 H 0.05 0.87 8.14 -51.93 -0.42 0.45 15 26 H 0.31 4.96 9.04 -39.29 -0.36 4.61 15 27 H 0.35 6.95 7.19 -39.29 -0.28 6.67 15 LS Contribution 215.37 15.07 3.25 3.25 Total: -1.00 -27.71 215.37 -6.61 -34.32 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -3.71 Total: 11.65 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: -0.94 Total: -11.22 kcal Atomic # 7 Polarization: -54.03 SS G_CDS: -0.19 Total: -54.22 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 3.25 Total: 3.25 kcal Total: -27.71 -6.61 -34.32 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257913036.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.070 kcal (2) G-P(sol) polarization free energy of solvation -27.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds