Wall clock time and date at job start Mon Mar 30 2020 01:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86809 * 119.99857 * 2 1 4 4 H 1.48501 * 109.46868 * 240.00034 * 3 2 1 5 5 H 1.48496 * 109.46843 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46761 * 120.00100 * 3 2 1 7 7 C 1.37875 * 120.00015 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99609 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00032 * 0.02562 * 7 2 1 10 10 H 1.08993 * 109.57437 * 59.83875 * 9 7 2 11 11 C 1.53118 * 109.51826 * 299.67768 * 9 7 2 12 12 C 1.53039 * 109.27641 * 182.44058 * 11 9 7 13 13 N 1.46843 * 109.52055 * 59.18353 * 12 11 9 14 14 C 1.46840 * 111.20110 * 298.25406 * 13 12 11 15 15 C 1.53042 * 109.52220 * 61.74300 * 14 13 12 16 16 H 1.09002 * 109.50537 * 180.88193 * 15 14 13 17 17 N 1.46904 * 109.53570 * 60.78216 * 15 14 13 18 18 H 0.97001 * 120.00022 * 359.97438 * 1 2 3 19 19 H 1.08993 * 109.50899 * 302.38292 * 11 9 7 20 20 H 1.09009 * 109.50124 * 62.50672 * 11 9 7 21 21 H 1.09006 * 109.46331 * 179.19938 * 12 11 9 22 22 H 1.09002 * 109.46364 * 299.17772 * 12 11 9 23 23 H 1.00900 * 111.00356 * 62.35808 * 13 12 11 24 24 H 1.09004 * 109.46461 * 301.72979 * 14 13 12 25 25 H 1.09002 * 109.46704 * 181.75905 * 14 13 12 26 26 H 1.00905 * 110.99892 * 60.09524 * 17 15 14 27 27 H 1.00898 * 111.00243 * 184.05562 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 1 0.6220 -2.5568 -0.8899 11 6 0.3759 -2.5858 1.2518 12 6 -0.3398 -3.9383 1.2758 13 7 0.6540 -5.0193 1.2752 14 6 1.4752 -4.9851 0.0584 15 6 2.2450 -3.6638 -0.0021 16 1 2.8425 -3.6321 -0.9133 17 7 3.1278 -3.5557 1.1672 18 1 -0.4850 0.8401 0.0004 19 1 1.0010 -2.4890 2.1394 20 1 -0.3622 -1.7837 1.2364 21 1 -0.9528 -4.0089 2.1744 22 1 -0.9751 -4.0287 0.3948 23 1 1.2310 -4.9806 2.1021 24 1 0.8312 -5.0706 -0.8169 25 1 2.1805 -5.8161 0.0726 26 1 3.7924 -4.3145 1.1899 27 1 3.5975 -2.6629 1.1843 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000257913036.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:01 Heat of formation + Delta-G solvation = -32.837752 kcal Electronic energy + Delta-G solvation = -10400.743007 eV Core-core repulsion = 8577.618987 eV Total energy + Delta-G solvation = -1823.124020 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.80338 -35.11721 -34.09254 -31.63197 -29.29329 -27.06289 -23.59028 -23.04411 -20.27853 -18.43702 -17.21155 -16.35260 -16.00508 -15.54923 -15.16300 -14.84865 -13.75380 -13.65407 -13.09146 -13.04188 -12.61209 -12.49038 -12.42043 -12.03657 -11.45794 -11.15002 -10.80041 -10.47479 -9.42678 -9.00085 -8.05474 -6.21711 1.39805 1.40723 1.47875 2.41598 3.17773 3.59460 4.00325 4.30249 4.35110 4.48845 4.72845 4.87543 4.89376 4.97872 5.14913 5.31131 5.51377 5.59310 5.91477 5.98657 6.29590 6.34538 6.51522 6.71550 6.89126 6.89326 7.45655 8.95781 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.069139 B = 0.016520 C = 0.014476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.885350 B = 1694.554126 C = 1933.706077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.011 3.989 3 Si 0.953 3.047 4 H -0.274 1.274 5 H -0.288 1.288 6 H -0.271 1.271 7 C -0.524 4.524 8 H 0.053 0.947 9 C 0.052 3.948 10 H -0.014 1.014 11 C -0.121 4.121 12 C 0.062 3.938 13 N -0.672 5.672 14 C 0.069 3.931 15 C 0.066 3.934 16 H 0.012 0.988 17 N -0.833 5.833 18 H 0.259 0.741 19 H 0.037 0.963 20 H 0.050 0.950 21 H 0.070 0.930 22 H 0.048 0.952 23 H 0.346 0.654 24 H 0.060 0.940 25 H 0.086 0.914 26 H 0.337 0.663 27 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.874 -5.986 1.638 7.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.188 4.188 3 Si 0.779 3.221 4 H -0.199 1.199 5 H -0.213 1.213 6 H -0.196 1.196 7 C -0.562 4.562 8 H 0.071 0.929 9 C 0.034 3.966 10 H 0.004 0.996 11 C -0.161 4.161 12 C -0.068 4.068 13 N -0.300 5.300 14 C -0.061 4.061 15 C -0.047 4.047 16 H 0.030 0.970 17 N -0.365 5.365 18 H 0.068 0.932 19 H 0.055 0.945 20 H 0.069 0.931 21 H 0.088 0.912 22 H 0.067 0.933 23 H 0.164 0.836 24 H 0.078 0.922 25 H 0.104 0.896 26 H 0.149 0.851 27 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.602 -6.428 1.811 7.167 hybrid contribution 1.536 2.147 -0.759 2.747 sum 4.138 -4.281 1.052 6.046 Atomic orbital electron populations 1.70033 1.07221 1.26978 1.51480 1.25737 0.95627 1.02352 0.95075 0.85692 0.78352 0.79367 0.78663 1.19926 1.21329 1.19591 1.21407 0.92736 0.91965 1.50124 0.92857 1.18635 0.92773 0.92162 0.93073 0.99599 1.21885 0.99035 0.96854 0.98329 1.21950 0.94582 0.89685 1.00599 1.60857 1.18498 1.45335 1.05318 1.21990 0.95474 0.95174 0.93509 1.21967 0.94788 0.97257 0.90696 0.97004 1.58590 1.26386 1.07919 1.43583 0.93237 0.94462 0.93120 0.91179 0.93305 0.83566 0.92174 0.89568 0.85054 0.84314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.63 11.37 21.45 0.24 -53.39 15 2 C 0.01 0.58 5.31 84.65 0.45 1.03 15 3 Si 0.95 43.68 29.54 68.60 2.03 45.70 15 4 H -0.27 -12.22 7.11 99.48 0.71 -11.52 15 5 H -0.29 -13.09 7.11 99.48 0.71 -12.38 15 6 H -0.27 -12.02 7.11 99.48 0.71 -11.31 15 7 C -0.52 -28.38 7.88 25.60 0.20 -28.18 15 8 H 0.05 2.78 6.69 -2.91 -0.02 2.76 15 9 C 0.05 2.62 1.99 -11.46 -0.02 2.60 15 10 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 15 11 C -0.12 -5.85 4.94 30.65 0.15 -5.70 15 12 C 0.06 2.47 6.55 86.33 0.57 3.04 15 13 N -0.67 -23.66 6.85 -514.00 -3.52 -27.18 15 14 C 0.07 2.39 6.22 86.33 0.54 2.93 15 15 C 0.07 2.64 3.11 44.97 0.14 2.78 15 16 H 0.01 0.49 8.14 -2.39 -0.02 0.47 15 17 N -0.83 -29.38 8.00 -168.45 -1.35 -30.73 15 18 H 0.26 14.50 8.31 -92.71 -0.77 13.73 15 19 H 0.04 1.83 7.73 -2.39 -0.02 1.81 15 20 H 0.05 2.79 6.17 -2.38 -0.01 2.78 15 21 H 0.07 2.56 8.14 -2.38 -0.02 2.54 15 22 H 0.05 2.02 8.14 -2.39 -0.02 2.00 15 23 H 0.35 11.79 8.31 -89.69 -0.75 11.04 15 24 H 0.06 2.14 8.14 -2.39 -0.02 2.12 15 25 H 0.09 2.47 8.14 -2.39 -0.02 2.45 15 26 H 0.34 9.52 9.04 -89.69 -0.81 8.71 15 27 H 0.34 13.07 7.19 -89.70 -0.65 12.43 15 Total: -1.00 -58.70 215.37 -1.60 -60.30 By element: Atomic # 1 Polarization: 27.82 SS G_CDS: -1.02 Total: 26.80 kcal Atomic # 6 Polarization: -23.52 SS G_CDS: 2.02 Total: -21.50 kcal Atomic # 7 Polarization: -106.67 SS G_CDS: -4.63 Total: -111.30 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Total: -58.70 -1.60 -60.30 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257913036.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.460 kcal (2) G-P(sol) polarization free energy of solvation -58.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds