Wall clock time and date at job start Mon Mar 30 2020 02:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00235 * 2 1 4 4 H 1.48508 * 109.46969 * 270.00028 * 3 2 1 5 5 H 1.48504 * 109.47107 * 29.99690 * 3 2 1 6 6 H 1.48498 * 109.47448 * 149.99653 * 3 2 1 7 7 C 1.37875 * 120.00093 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00493 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99757 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.61772 * 299.77469 * 9 7 2 11 11 C 1.53177 * 109.54266 * 60.00156 * 9 7 2 12 12 C 1.53098 * 109.21356 * 176.87702 * 11 9 7 13 13 O 1.42899 * 109.41440 * 302.35638 * 12 11 9 14 14 C 1.42904 * 114.09711 * 61.16120 * 13 12 11 15 15 C 1.53100 * 109.41581 * 298.84173 * 14 13 12 16 16 H 1.08994 * 109.52304 * 177.58032 * 15 14 13 17 17 N 1.46904 * 109.51544 * 297.70222 * 15 14 13 18 18 H 0.96998 * 119.99737 * 0.02562 * 1 2 3 19 19 H 1.09002 * 109.52487 * 56.93913 * 11 9 7 20 20 H 1.09004 * 109.52023 * 296.81533 * 11 9 7 21 21 H 1.08999 * 109.47859 * 62.34349 * 12 11 9 22 22 H 1.08997 * 109.47984 * 182.36161 * 12 11 9 23 23 H 1.09002 * 109.48461 * 58.81736 * 14 13 12 24 24 H 1.09002 * 109.48312 * 178.85406 * 14 13 12 25 25 H 1.00896 * 111.00162 * 299.99719 * 17 15 14 26 26 H 1.00905 * 111.00099 * 63.95775 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6261 -2.5609 0.8915 11 6 0.3702 -2.5823 -1.2499 12 6 -0.3317 -3.9425 -1.2823 13 8 0.6476 -4.9830 -1.2600 14 6 1.4698 -4.9854 -0.0912 15 6 2.2441 -3.6671 -0.0109 16 1 2.8391 -3.6492 0.9021 17 7 3.1299 -3.5465 -1.1766 18 1 -0.4850 0.8401 -0.0004 19 1 0.9897 -2.4708 -2.1399 20 1 -0.3757 -1.7879 -1.2235 21 1 -0.9821 -4.0366 -0.4127 22 1 -0.9270 -4.0228 -2.1918 23 1 0.8430 -5.0932 0.7941 24 1 2.1724 -5.8172 -0.1427 25 1 3.7910 -4.3080 -1.2087 26 1 2.5970 -3.4938 -2.0318 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258510861.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:15 Heat of formation + Delta-G solvation = -77.231332 kcal Electronic energy + Delta-G solvation = -10516.117976 eV Core-core repulsion = 8593.350243 eV Total energy + Delta-G solvation = -1922.767733 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.37042 -36.09460 -34.44239 -32.29383 -29.56110 -27.72803 -24.36098 -23.87494 -20.15499 -18.41948 -17.44863 -16.86976 -16.35356 -16.04395 -15.74607 -14.78418 -14.24139 -14.06351 -13.28606 -12.94505 -12.79214 -12.56579 -12.35579 -12.01733 -11.49194 -11.10958 -10.81518 -10.57857 -10.32653 -9.14010 -8.02584 -6.11434 1.42477 1.43721 1.53808 2.48127 3.01972 3.23752 3.97554 4.19121 4.27856 4.38751 4.52793 4.61256 4.70387 4.80115 4.98447 5.15020 5.48046 5.61972 5.91943 6.00568 6.34302 6.42283 6.60756 6.91208 6.98022 7.54493 9.01816 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.070219 B = 0.016382 C = 0.014403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 398.659073 B = 1708.768762 C = 1943.571387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.004 3.996 3 Si 0.952 3.048 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.497 4.497 8 H 0.055 0.945 9 C 0.047 3.953 10 H -0.003 1.003 11 C -0.136 4.136 12 C 0.063 3.937 13 O -0.397 6.397 14 C 0.029 3.971 15 C 0.069 3.931 16 H 0.070 0.930 17 N -0.828 5.828 18 H 0.257 0.743 19 H 0.040 0.960 20 H 0.069 0.931 21 H 0.040 0.960 22 H 0.099 0.901 23 H 0.047 0.953 24 H 0.109 0.891 25 H 0.337 0.663 26 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.702 -7.083 -1.400 7.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.779 3.221 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.536 4.536 8 H 0.073 0.927 9 C 0.028 3.972 10 H 0.015 0.985 11 C -0.175 4.175 12 C -0.013 4.013 13 O -0.316 6.316 14 C -0.049 4.049 15 C -0.043 4.043 16 H 0.088 0.912 17 N -0.358 5.358 18 H 0.066 0.934 19 H 0.059 0.941 20 H 0.088 0.912 21 H 0.058 0.942 22 H 0.117 0.883 23 H 0.066 0.934 24 H 0.127 0.873 25 H 0.149 0.851 26 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.828 -6.400 -1.207 6.765 hybrid contribution -0.259 0.431 0.042 0.505 sum 1.569 -5.969 -1.166 6.281 Atomic orbital electron populations 1.69995 1.06944 1.26729 1.52924 1.25708 0.95655 1.02148 0.95726 0.85648 0.78653 0.79928 0.77882 1.20624 1.21249 1.19703 1.21404 0.93163 0.91164 1.47832 0.92694 1.18735 0.92469 0.92874 0.93127 0.98484 1.22059 1.00170 0.96378 0.98875 1.22701 0.90069 0.87090 1.01457 1.87768 1.49069 1.52080 1.42657 1.23507 0.94255 0.99056 0.88098 1.22022 0.93955 0.94081 0.94231 0.91196 1.58754 1.20903 1.50930 1.05248 0.93379 0.94142 0.91223 0.94192 0.88268 0.93436 0.87327 0.85083 0.84879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.67 11.36 21.45 0.24 -53.43 15 2 C 0.00 0.25 5.30 84.65 0.45 0.70 15 3 Si 0.95 44.97 29.54 68.60 2.03 46.99 15 4 H -0.28 -13.03 7.11 99.48 0.71 -12.33 15 5 H -0.29 -13.28 7.11 99.48 0.71 -12.58 15 6 H -0.27 -12.61 7.11 99.48 0.71 -11.90 15 7 C -0.50 -27.61 8.16 25.60 0.21 -27.41 15 8 H 0.05 3.11 7.59 -2.91 -0.02 3.08 15 9 C 0.05 2.31 2.03 -11.37 -0.02 2.29 15 10 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 15 11 C -0.14 -6.37 4.80 30.69 0.15 -6.22 15 12 C 0.06 2.41 6.84 72.01 0.49 2.91 15 13 O -0.40 -14.49 10.34 -148.98 -1.54 -16.04 15 14 C 0.03 0.99 6.45 72.02 0.46 1.46 15 15 C 0.07 2.78 3.16 45.05 0.14 2.92 15 16 H 0.07 2.81 8.14 -2.39 -0.02 2.79 15 17 N -0.83 -31.23 8.63 -168.10 -1.45 -32.68 15 18 H 0.26 14.31 8.31 -92.71 -0.77 13.54 15 19 H 0.04 1.91 6.74 -2.39 -0.02 1.89 15 20 H 0.07 3.68 6.18 -2.38 -0.01 3.67 15 21 H 0.04 1.52 8.14 -2.39 -0.02 1.50 15 22 H 0.10 3.31 8.14 -2.39 -0.02 3.29 15 23 H 0.05 1.57 8.14 -2.39 -0.02 1.55 15 24 H 0.11 2.97 8.14 -2.39 -0.02 2.95 15 25 H 0.34 10.28 9.04 -89.70 -0.81 9.47 15 26 H 0.34 13.10 6.77 -89.69 -0.61 12.49 15 Total: -1.00 -60.18 211.42 0.92 -59.25 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: -0.24 Total: 19.25 kcal Atomic # 6 Polarization: -25.23 SS G_CDS: 1.88 Total: -23.35 kcal Atomic # 7 Polarization: -84.90 SS G_CDS: -1.21 Total: -86.11 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -1.54 Total: -16.04 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 46.99 kcal Total: -60.18 0.92 -59.25 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258510861.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.978 kcal (2) G-P(sol) polarization free energy of solvation -60.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds