Wall clock time and date at job start Mon Mar 30 2020 02:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86808 * 120.00239 * 2 1 4 4 H 1.48503 * 109.47012 * 239.99819 * 3 2 1 5 5 H 1.48501 * 109.46996 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46966 * 119.99895 * 3 2 1 7 7 C 1.37876 * 120.00194 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00383 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99791 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.54566 * 59.81706 * 9 7 2 11 11 C 1.53178 * 109.61133 * 299.59511 * 9 7 2 12 12 C 1.53096 * 109.16278 * 183.10845 * 11 9 7 13 13 O 1.42930 * 109.41898 * 57.61137 * 12 11 9 14 14 C 1.42904 * 114.08305 * 298.84863 * 13 12 11 15 15 C 1.53093 * 109.42351 * 61.15476 * 14 13 12 16 16 H 1.08998 * 109.52401 * 182.47941 * 15 14 13 17 17 N 1.46903 * 109.52432 * 62.35426 * 15 14 13 18 18 H 0.97006 * 119.99815 * 359.97438 * 1 2 3 19 19 H 1.08999 * 109.52488 * 303.01430 * 11 9 7 20 20 H 1.09004 * 109.52654 * 63.20643 * 11 9 7 21 21 H 1.09003 * 109.48254 * 177.58780 * 12 11 9 22 22 H 1.08992 * 109.48305 * 297.61902 * 12 11 9 23 23 H 1.09002 * 109.48241 * 301.16394 * 14 13 12 24 24 H 1.08999 * 109.47648 * 181.13988 * 14 13 12 25 25 H 1.00893 * 110.99901 * 59.99776 * 17 15 14 26 26 H 1.00894 * 110.99601 * 183.95880 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 1 0.6217 -2.5569 -0.8876 11 6 0.3763 -2.5878 1.2549 12 6 -0.3243 -3.9487 1.2839 13 8 0.6558 -4.9886 1.2514 14 6 1.4721 -4.9840 0.0785 15 6 2.2449 -3.6647 0.0012 16 1 2.8344 -3.6410 -0.9153 17 7 3.1375 -3.5497 1.1622 18 1 -0.4850 0.8401 0.0004 19 1 1.0000 -2.4803 2.1423 20 1 -0.3706 -1.7941 1.2351 21 1 -0.9148 -4.0343 2.1961 22 1 -0.9791 -4.0391 0.4172 23 1 0.8410 -5.0880 -0.8041 24 1 2.1757 -5.8153 0.1222 25 1 3.7994 -4.3109 1.1861 26 1 3.6107 -2.6587 1.1676 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258510864.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:18 Heat of formation + Delta-G solvation = -55.584347 kcal Electronic energy + Delta-G solvation = -10501.241707 eV Core-core repulsion = 8579.412658 eV Total energy + Delta-G solvation = -1921.829049 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.42761 -34.35096 -32.56158 -30.36336 -27.83017 -25.98080 -22.48795 -21.87169 -18.42536 -16.43934 -15.47768 -14.97619 -14.67931 -14.31635 -13.76859 -13.40581 -12.25397 -12.10787 -11.56632 -11.19421 -10.82522 -10.69018 -10.49738 -10.06795 -9.69670 -9.25901 -9.01098 -8.44088 -8.22516 -7.58724 -5.99791 -4.06063 3.30288 3.35336 3.37342 4.41736 4.73732 5.27400 5.53817 5.81944 5.93372 6.17551 6.22361 6.38412 6.42667 6.54859 6.82501 7.22754 7.46035 7.58028 7.89613 7.96455 8.17415 8.24714 8.41137 8.47630 8.93801 9.57661 11.05906 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.069659 B = 0.016434 C = 0.014385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 401.859577 B = 1703.336737 C = 1945.944257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.063 3.937 3 Si 0.891 3.109 4 H -0.279 1.279 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.509 4.509 8 H 0.052 0.948 9 C 0.055 3.945 10 H 0.024 0.976 11 C -0.132 4.132 12 C 0.059 3.941 13 O -0.384 6.384 14 C 0.072 3.928 15 C 0.063 3.937 16 H 0.022 0.978 17 N -0.828 5.828 18 H 0.261 0.739 19 H 0.056 0.944 20 H 0.089 0.911 21 H 0.072 0.928 22 H 0.032 0.968 23 H 0.040 0.960 24 H 0.072 0.928 25 H 0.315 0.685 26 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.169 -5.087 0.109 5.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.205 1.205 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.547 4.547 8 H 0.070 0.930 9 C 0.036 3.964 10 H 0.042 0.958 11 C -0.170 4.170 12 C -0.017 4.017 13 O -0.302 6.302 14 C -0.005 4.005 15 C -0.049 4.049 16 H 0.040 0.960 17 N -0.358 5.358 18 H 0.070 0.930 19 H 0.075 0.925 20 H 0.108 0.892 21 H 0.090 0.910 22 H 0.050 0.950 23 H 0.059 0.941 24 H 0.090 0.910 25 H 0.126 0.874 26 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.353 -5.146 0.683 5.364 hybrid contribution 1.208 1.270 -0.994 2.015 sum 2.561 -3.876 -0.311 4.656 Atomic orbital electron populations 1.69865 1.05883 1.26511 1.50580 1.24944 0.94851 0.98992 0.95091 0.86679 0.79613 0.83305 0.78485 1.20492 1.21313 1.20250 1.20985 0.92434 0.90583 1.50699 0.93015 1.18708 0.92297 0.91150 0.94245 0.95757 1.22066 1.00411 0.94449 1.00114 1.22712 0.89989 0.89529 0.99459 1.87782 1.48906 1.51899 1.41648 1.22488 0.93059 0.97083 0.87893 1.22056 0.95347 0.97004 0.90458 0.96009 1.58576 1.25163 1.06885 1.45218 0.92953 0.92482 0.89247 0.90979 0.94987 0.94137 0.90980 0.87437 0.83868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.30 11.39 55.43 0.63 -24.67 15 2 C 0.06 1.72 5.31 -17.82 -0.09 1.62 15 3 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 15 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 5 H -0.29 -6.81 7.11 56.52 0.40 -6.40 15 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 7 C -0.51 -13.72 7.89 -34.44 -0.27 -13.99 15 8 H 0.05 1.36 6.65 -52.49 -0.35 1.01 15 9 C 0.05 1.37 2.01 -91.59 -0.18 1.19 15 10 H 0.02 0.66 8.14 -51.93 -0.42 0.24 15 11 C -0.13 -3.24 4.99 -26.59 -0.13 -3.37 15 12 C 0.06 1.26 6.84 37.21 0.25 1.52 15 13 O -0.38 -8.15 10.67 -35.23 -0.38 -8.53 15 14 C 0.07 1.39 6.45 37.21 0.24 1.63 15 15 C 0.06 1.34 3.13 -67.57 -0.21 1.12 15 16 H 0.02 0.46 8.14 -51.93 -0.42 0.04 15 17 N -0.83 -16.51 8.53 -4.55 -0.04 -16.55 15 18 H 0.26 7.10 8.31 -40.82 -0.34 6.76 15 19 H 0.06 1.47 7.76 -51.93 -0.40 1.06 15 20 H 0.09 2.39 6.21 -51.93 -0.32 2.07 15 21 H 0.07 1.39 8.14 -51.93 -0.42 0.97 15 22 H 0.03 0.66 8.14 -51.93 -0.42 0.23 15 23 H 0.04 0.74 8.14 -51.93 -0.42 0.32 15 24 H 0.07 1.20 8.14 -51.93 -0.42 0.78 15 25 H 0.32 5.31 9.04 -39.30 -0.36 4.96 15 26 H 0.35 7.11 7.17 -39.30 -0.28 6.83 15 LS Contribution 212.07 15.07 3.20 3.20 Total: -1.00 -28.72 212.07 -5.39 -34.11 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -3.38 Total: 6.59 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: -0.40 Total: -10.27 kcal Atomic # 7 Polarization: -41.81 SS G_CDS: 0.59 Total: -41.22 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: -0.38 Total: -8.53 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 3.20 Total: 3.20 kcal Total: -28.72 -5.39 -34.11 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258510864.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.471 kcal (2) G-P(sol) polarization free energy of solvation -28.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds