Wall clock time and date at job start Mon Mar 30 2020 02:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86808 * 120.00239 * 2 1 4 4 H 1.48503 * 109.47012 * 239.99819 * 3 2 1 5 5 H 1.48501 * 109.46996 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46966 * 119.99895 * 3 2 1 7 7 C 1.37876 * 120.00194 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00383 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99791 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.54566 * 59.81706 * 9 7 2 11 11 C 1.53178 * 109.61133 * 299.59511 * 9 7 2 12 12 C 1.53096 * 109.16278 * 183.10845 * 11 9 7 13 13 O 1.42930 * 109.41898 * 57.61137 * 12 11 9 14 14 C 1.42904 * 114.08305 * 298.84863 * 13 12 11 15 15 C 1.53093 * 109.42351 * 61.15476 * 14 13 12 16 16 H 1.08998 * 109.52401 * 182.47941 * 15 14 13 17 17 N 1.46903 * 109.52432 * 62.35426 * 15 14 13 18 18 H 0.97006 * 119.99815 * 359.97438 * 1 2 3 19 19 H 1.08999 * 109.52488 * 303.01430 * 11 9 7 20 20 H 1.09004 * 109.52654 * 63.20643 * 11 9 7 21 21 H 1.09003 * 109.48254 * 177.58780 * 12 11 9 22 22 H 1.08992 * 109.48305 * 297.61902 * 12 11 9 23 23 H 1.09002 * 109.48241 * 301.16394 * 14 13 12 24 24 H 1.08999 * 109.47648 * 181.13988 * 14 13 12 25 25 H 1.00893 * 110.99901 * 59.99776 * 17 15 14 26 26 H 1.00894 * 110.99601 * 183.95880 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 1 0.6217 -2.5569 -0.8876 11 6 0.3763 -2.5878 1.2549 12 6 -0.3243 -3.9487 1.2839 13 8 0.6558 -4.9886 1.2514 14 6 1.4721 -4.9840 0.0785 15 6 2.2449 -3.6647 0.0012 16 1 2.8344 -3.6410 -0.9153 17 7 3.1375 -3.5497 1.1622 18 1 -0.4850 0.8401 0.0004 19 1 1.0000 -2.4803 2.1423 20 1 -0.3706 -1.7941 1.2351 21 1 -0.9148 -4.0343 2.1961 22 1 -0.9791 -4.0391 0.4172 23 1 0.8410 -5.0880 -0.8041 24 1 2.1757 -5.8153 0.1222 25 1 3.7994 -4.3109 1.1861 26 1 3.6107 -2.6587 1.1676 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258510864.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:18 Heat of formation + Delta-G solvation = -76.759392 kcal Electronic energy + Delta-G solvation = -10502.159926 eV Core-core repulsion = 8579.412658 eV Total energy + Delta-G solvation = -1922.747268 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.14207 -36.15591 -34.44374 -32.26203 -29.50210 -27.90588 -24.36026 -23.63904 -20.22686 -18.45914 -17.23992 -16.65394 -16.41158 -16.18175 -15.46496 -15.13608 -14.19173 -13.87419 -13.28531 -13.02590 -12.64531 -12.54949 -12.38473 -12.00122 -11.57666 -11.05787 -10.92054 -10.46955 -10.07151 -9.20379 -8.07524 -6.20601 1.41949 1.43255 1.50134 2.43264 3.13494 3.19262 3.95788 4.21044 4.32546 4.47458 4.60678 4.74889 4.77406 4.79066 5.03574 5.24366 5.52421 5.59714 5.92052 5.99146 6.34331 6.42993 6.60092 6.87506 6.94630 7.46473 8.96775 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.069659 B = 0.016434 C = 0.014385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 401.859577 B = 1703.336737 C = 1945.944257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.011 3.989 3 Si 0.954 3.046 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.048 3.952 10 H -0.006 1.006 11 C -0.123 4.123 12 C 0.066 3.934 13 O -0.388 6.388 14 C 0.070 3.930 15 C 0.067 3.933 16 H 0.026 0.974 17 N -0.831 5.831 18 H 0.260 0.740 19 H 0.039 0.961 20 H 0.061 0.939 21 H 0.093 0.907 22 H 0.037 0.963 23 H 0.049 0.951 24 H 0.106 0.894 25 H 0.336 0.664 26 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.063 -5.738 0.224 6.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.187 4.187 3 Si 0.780 3.220 4 H -0.198 1.198 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.560 4.560 8 H 0.074 0.926 9 C 0.029 3.971 10 H 0.012 0.988 11 C -0.161 4.161 12 C -0.011 4.011 13 O -0.307 6.307 14 C -0.007 4.007 15 C -0.045 4.045 16 H 0.044 0.956 17 N -0.363 5.363 18 H 0.069 0.931 19 H 0.058 0.942 20 H 0.079 0.921 21 H 0.111 0.889 22 H 0.055 0.945 23 H 0.067 0.933 24 H 0.124 0.876 25 H 0.149 0.851 26 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.266 -5.822 0.798 6.298 hybrid contribution 0.945 1.448 -1.045 2.020 sum 3.211 -4.373 -0.247 5.431 Atomic orbital electron populations 1.70006 1.07204 1.27097 1.51489 1.25725 0.95654 1.02341 0.94991 0.85674 0.78349 0.79271 0.78675 1.19819 1.21301 1.19694 1.21358 0.92843 0.91689 1.50157 0.92633 1.18691 0.92914 0.92398 0.93081 0.98759 1.21860 0.99495 0.95751 0.98999 1.22624 0.89939 0.87690 1.00820 1.87779 1.49000 1.51316 1.42629 1.22662 0.93378 0.96968 0.87686 1.21926 0.94955 0.96483 0.91147 0.95625 1.58502 1.25762 1.07522 1.44554 0.93133 0.94181 0.92063 0.88930 0.94466 0.93259 0.87581 0.85109 0.84396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.01 11.39 21.45 0.24 -52.76 15 2 C 0.01 0.62 5.31 84.66 0.45 1.07 15 3 Si 0.95 43.36 29.54 68.60 2.03 45.39 15 4 H -0.27 -12.04 7.11 99.48 0.71 -11.33 15 5 H -0.29 -12.95 7.11 99.48 0.71 -12.24 15 6 H -0.27 -12.03 7.11 99.48 0.71 -11.33 15 7 C -0.52 -28.16 7.89 25.60 0.20 -27.96 15 8 H 0.06 2.88 6.65 -2.91 -0.02 2.86 15 9 C 0.05 2.40 2.01 -11.42 -0.02 2.38 15 10 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 15 11 C -0.12 -6.03 4.99 30.69 0.15 -5.87 15 12 C 0.07 2.70 6.84 72.01 0.49 3.20 15 13 O -0.39 -15.55 10.67 -148.98 -1.59 -17.14 15 14 C 0.07 2.51 6.45 72.01 0.46 2.98 15 15 C 0.07 2.72 3.13 45.01 0.14 2.86 15 16 H 0.03 1.03 8.14 -2.39 -0.02 1.01 15 17 N -0.83 -31.58 8.53 -168.30 -1.44 -33.01 15 18 H 0.26 14.35 8.31 -92.70 -0.77 13.58 15 19 H 0.04 2.06 7.76 -2.39 -0.02 2.04 15 20 H 0.06 3.34 6.21 -2.39 -0.01 3.33 15 21 H 0.09 3.40 8.14 -2.39 -0.02 3.38 15 22 H 0.04 1.49 8.14 -2.39 -0.02 1.47 15 23 H 0.05 1.69 8.14 -2.39 -0.02 1.67 15 24 H 0.11 3.10 8.14 -2.39 -0.02 3.08 15 25 H 0.34 10.38 9.04 -89.70 -0.81 9.57 15 26 H 0.34 13.57 7.17 -89.70 -0.64 12.92 15 Total: -1.00 -60.03 212.07 0.85 -59.18 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: -0.27 Total: 19.68 kcal Atomic # 6 Polarization: -23.22 SS G_CDS: 1.88 Total: -21.34 kcal Atomic # 7 Polarization: -84.58 SS G_CDS: -1.19 Total: -85.77 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -1.59 Total: -17.14 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -60.03 0.85 -59.18 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258510864.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.579 kcal (2) G-P(sol) polarization free energy of solvation -60.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds