Wall clock time and date at job start Mon Mar 30 2020 02:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86794 * 120.00407 * 2 1 4 4 H 1.48507 * 109.47223 * 264.78963 * 3 2 1 5 5 H 1.48501 * 109.46981 * 24.78195 * 3 2 1 6 6 H 1.48501 * 109.47480 * 144.78754 * 3 2 1 7 7 C 1.37874 * 119.99766 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00558 * 5.44648 * 7 2 1 9 9 C 1.50703 * 120.00129 * 185.45250 * 7 2 1 10 10 H 1.08996 * 109.57239 * 335.05031 * 9 7 2 11 11 C 1.53119 * 109.52745 * 95.21004 * 9 7 2 12 12 C 1.53029 * 109.27974 * 177.56158 * 11 9 7 13 13 N 1.46852 * 109.52537 * 300.82106 * 12 11 9 14 14 C 1.46841 * 111.19613 * 61.73949 * 13 12 11 15 15 C 1.53038 * 109.51875 * 298.26496 * 14 13 12 16 16 H 1.09004 * 109.50194 * 299.23955 * 15 14 13 17 17 O 1.42892 * 109.50543 * 179.11611 * 15 14 13 18 18 H 0.96999 * 120.00070 * 359.97438 * 1 2 3 19 19 H 1.09000 * 109.50173 * 57.61702 * 11 9 7 20 20 H 1.08998 * 109.53191 * 297.52579 * 11 9 7 21 21 H 1.09002 * 109.46297 * 180.80224 * 12 11 9 22 22 H 1.09001 * 109.46754 * 60.83471 * 12 11 9 23 23 H 1.00897 * 111.00341 * 185.84119 * 13 12 11 24 24 H 1.08998 * 109.46235 * 58.27840 * 14 13 12 25 25 H 1.09008 * 109.45922 * 178.25500 * 14 13 12 26 26 H 0.96703 * 113.99994 * 60.00232 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.6069 1.9827 -1.3943 5 1 1.3959 2.6819 0.5869 6 1 3.4873 1.4744 0.8073 7 6 2.0044 -1.1941 -0.0005 8 1 1.4681 -2.1273 -0.0897 9 6 3.5063 -1.1972 0.1235 10 1 3.9041 -0.2471 -0.2331 11 6 3.8984 -1.3980 1.5899 12 6 5.4233 -1.4612 1.7012 13 7 5.9295 -2.5714 0.8841 14 6 5.6060 -2.3768 -0.5350 15 6 4.0864 -2.3409 -0.7128 16 1 3.6588 -3.2872 -0.3815 17 8 3.7722 -2.1309 -2.0908 18 1 -0.4850 0.8400 0.0004 19 1 3.4678 -2.3295 1.9574 20 1 3.5243 -0.5647 2.1846 21 1 5.7053 -1.6184 2.7423 22 1 5.8526 -0.5242 1.3464 23 1 6.9224 -2.6936 1.0152 24 1 6.0343 -1.4355 -0.8793 25 1 6.0206 -3.1992 -1.1181 26 1 4.1120 -2.8176 -2.6808 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258518669.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:03 Heat of formation + Delta-G solvation = -56.530570 kcal Electronic energy + Delta-G solvation = -10418.638231 eV Core-core repulsion = 8496.768151 eV Total energy + Delta-G solvation = -1921.870080 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.32048 -35.04848 -33.02105 -30.84949 -28.96276 -25.42887 -22.16522 -21.51896 -18.86970 -16.86933 -16.70564 -15.59720 -14.29436 -14.20116 -13.49235 -13.37201 -12.63909 -12.25298 -11.84598 -11.53752 -11.23416 -10.85266 -10.54620 -10.14745 -9.75572 -9.33488 -9.09399 -8.88625 -8.42337 -8.09470 -5.97837 -3.93973 3.35445 3.42248 3.43629 4.49670 4.50730 5.21883 5.35339 5.45707 5.61107 5.80767 5.85787 5.94422 6.18229 6.37379 6.51746 6.77332 6.92648 7.13832 7.36917 7.42492 7.67966 7.84350 8.50814 8.62743 9.07188 9.65679 11.16194 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.051539 B = 0.019062 C = 0.016845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.152003 B = 1468.510992 C = 1661.773103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.069 3.931 3 Si 0.879 3.121 4 H -0.277 1.277 5 H -0.291 1.291 6 H -0.269 1.269 7 C -0.493 4.493 8 H 0.072 0.928 9 C 0.020 3.980 10 H 0.033 0.967 11 C -0.108 4.108 12 C 0.051 3.949 13 N -0.684 5.684 14 C 0.025 3.975 15 C 0.119 3.881 16 H 0.053 0.947 17 O -0.549 6.549 18 H 0.262 0.738 19 H 0.065 0.935 20 H 0.061 0.939 21 H 0.065 0.935 22 H 0.022 0.978 23 H 0.333 0.667 24 H 0.029 0.971 25 H 0.063 0.937 26 H 0.355 0.645 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.302 -2.663 0.661 11.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.131 4.131 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.194 1.194 7 C -0.531 4.531 8 H 0.090 0.910 9 C 0.001 3.999 10 H 0.051 0.949 11 C -0.146 4.146 12 C -0.078 4.078 13 N -0.316 5.316 14 C -0.105 4.105 15 C 0.060 3.940 16 H 0.071 0.929 17 O -0.350 6.350 18 H 0.072 0.928 19 H 0.083 0.917 20 H 0.080 0.920 21 H 0.083 0.917 22 H 0.040 0.960 23 H 0.149 0.851 24 H 0.047 0.953 25 H 0.081 0.919 26 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 10.265 -2.386 1.022 10.588 hybrid contribution 1.388 1.135 -0.491 1.859 sum 11.653 -1.251 0.531 11.732 Atomic orbital electron populations 1.69905 1.06230 1.26716 1.51428 1.25019 0.94678 0.98805 0.94634 0.86850 0.79932 0.83882 0.78662 1.20273 1.21766 1.19367 1.20827 0.88619 0.94563 1.49077 0.91011 1.19171 0.97394 0.93322 0.90024 0.94921 1.21858 0.91242 1.01880 0.99627 1.22141 0.98329 0.90920 0.96380 1.60212 1.18920 1.45124 1.07307 1.22793 0.99495 0.99208 0.89019 1.21908 0.89918 1.00324 0.81898 0.92895 1.86772 1.79742 1.51075 1.17398 0.92834 0.91658 0.91998 0.91669 0.95998 0.85094 0.95253 0.91871 0.80164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.54 13.96 55.43 0.77 -27.77 15 2 C 0.07 2.07 5.47 -17.82 -0.10 1.98 15 3 Si 0.88 22.60 27.00 -169.99 -4.59 18.01 15 4 H -0.28 -7.15 7.11 56.52 0.40 -6.75 15 5 H -0.29 -7.37 7.11 56.52 0.40 -6.97 15 6 H -0.27 -6.55 6.80 56.52 0.38 -6.16 15 7 C -0.49 -14.40 8.58 -34.44 -0.30 -14.69 15 8 H 0.07 2.29 8.06 -52.48 -0.42 1.86 15 9 C 0.02 0.49 1.57 -91.66 -0.14 0.35 15 10 H 0.03 0.84 5.28 -51.93 -0.27 0.56 15 11 C -0.11 -2.31 5.36 -26.65 -0.14 -2.45 15 12 C 0.05 0.89 6.55 -3.84 -0.03 0.87 15 13 N -0.68 -11.06 6.85 -113.82 -0.78 -11.84 15 14 C 0.02 0.42 6.17 -3.84 -0.02 0.40 15 15 C 0.12 2.52 3.03 -26.66 -0.08 2.44 15 16 H 0.05 1.15 8.14 -51.93 -0.42 0.73 15 17 O -0.55 -11.68 13.01 -35.23 -0.46 -12.14 15 18 H 0.26 7.76 8.31 -40.82 -0.34 7.42 15 19 H 0.06 1.42 8.14 -51.93 -0.42 0.99 15 20 H 0.06 1.35 8.14 -51.93 -0.42 0.93 15 21 H 0.06 0.98 8.14 -51.93 -0.42 0.56 15 22 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 15 23 H 0.33 4.32 8.90 -39.29 -0.35 3.97 15 24 H 0.03 0.51 8.14 -51.93 -0.42 0.09 15 25 H 0.06 0.90 8.14 -51.92 -0.42 0.48 15 26 H 0.35 5.38 9.08 45.56 0.41 5.80 15 LS Contribution 215.18 15.07 3.24 3.24 Total: -1.00 -32.76 215.18 -5.36 -38.13 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -2.74 Total: 3.48 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: -0.81 Total: -11.12 kcal Atomic # 7 Polarization: -39.60 SS G_CDS: -0.01 Total: -39.60 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: -0.46 Total: -12.14 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -4.59 Total: 18.01 kcal Total LS contribution 3.24 Total: 3.24 kcal Total: -32.76 -5.36 -38.13 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258518669.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.405 kcal (2) G-P(sol) polarization free energy of solvation -32.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds