Wall clock time and date at job start Mon Mar 30 2020 02:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86794 * 120.00407 * 2 1 4 4 H 1.48507 * 109.47223 * 264.78963 * 3 2 1 5 5 H 1.48501 * 109.46981 * 24.78195 * 3 2 1 6 6 H 1.48501 * 109.47480 * 144.78754 * 3 2 1 7 7 C 1.37874 * 119.99766 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00558 * 5.44648 * 7 2 1 9 9 C 1.50703 * 120.00129 * 185.45250 * 7 2 1 10 10 H 1.08996 * 109.57239 * 335.05031 * 9 7 2 11 11 C 1.53119 * 109.52745 * 95.21004 * 9 7 2 12 12 C 1.53029 * 109.27974 * 177.56158 * 11 9 7 13 13 N 1.46852 * 109.52537 * 300.82106 * 12 11 9 14 14 C 1.46841 * 111.19613 * 61.73949 * 13 12 11 15 15 C 1.53038 * 109.51875 * 298.26496 * 14 13 12 16 16 H 1.09004 * 109.50194 * 299.23955 * 15 14 13 17 17 O 1.42892 * 109.50543 * 179.11611 * 15 14 13 18 18 H 0.96999 * 120.00070 * 359.97438 * 1 2 3 19 19 H 1.09000 * 109.50173 * 57.61702 * 11 9 7 20 20 H 1.08998 * 109.53191 * 297.52579 * 11 9 7 21 21 H 1.09002 * 109.46297 * 180.80224 * 12 11 9 22 22 H 1.09001 * 109.46754 * 60.83471 * 12 11 9 23 23 H 1.00897 * 111.00341 * 185.84119 * 13 12 11 24 24 H 1.08998 * 109.46235 * 58.27840 * 14 13 12 25 25 H 1.09008 * 109.45922 * 178.25500 * 14 13 12 26 26 H 0.96703 * 113.99994 * 60.00232 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.6069 1.9827 -1.3943 5 1 1.3959 2.6819 0.5869 6 1 3.4873 1.4744 0.8073 7 6 2.0044 -1.1941 -0.0005 8 1 1.4681 -2.1273 -0.0897 9 6 3.5063 -1.1972 0.1235 10 1 3.9041 -0.2471 -0.2331 11 6 3.8984 -1.3980 1.5899 12 6 5.4233 -1.4612 1.7012 13 7 5.9295 -2.5714 0.8841 14 6 5.6060 -2.3768 -0.5350 15 6 4.0864 -2.3409 -0.7128 16 1 3.6588 -3.2872 -0.3815 17 8 3.7722 -2.1309 -2.0908 18 1 -0.4850 0.8400 0.0004 19 1 3.4678 -2.3295 1.9574 20 1 3.5243 -0.5647 2.1846 21 1 5.7053 -1.6184 2.7423 22 1 5.8526 -0.5242 1.3464 23 1 6.9224 -2.6936 1.0152 24 1 6.0343 -1.4355 -0.8793 25 1 6.0206 -3.1992 -1.1181 26 1 4.1120 -2.8176 -2.6808 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258518669.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:03 Heat of formation + Delta-G solvation = -84.858210 kcal Electronic energy + Delta-G solvation = -10419.866610 eV Core-core repulsion = 8496.768151 eV Total energy + Delta-G solvation = -1923.098459 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.89905 -36.60862 -35.07796 -32.75919 -30.49252 -27.39093 -23.77038 -23.20536 -20.58861 -19.03891 -18.27428 -17.17863 -16.20701 -15.70132 -15.27068 -14.86882 -14.54902 -13.97668 -13.48785 -13.21016 -13.01966 -12.77418 -12.38244 -11.90416 -11.66422 -11.26636 -10.88682 -10.72783 -10.58984 -9.39076 -8.27706 -6.28172 1.30196 1.33674 1.42878 2.34601 3.07344 3.19838 3.81109 4.03408 4.10378 4.29767 4.44679 4.52417 4.68709 4.77258 4.94022 5.05219 5.23853 5.38149 5.59748 5.70883 6.00136 6.30316 6.60060 6.73442 7.16765 7.34474 8.90332 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.051539 B = 0.019062 C = 0.016845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.152003 B = 1468.510992 C = 1661.773103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.006 3.994 3 Si 0.945 3.055 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.244 1.244 7 C -0.497 4.497 8 H 0.024 0.976 9 C 0.013 3.987 10 H 0.026 0.974 11 C -0.107 4.107 12 C 0.059 3.941 13 N -0.686 5.686 14 C 0.037 3.963 15 C 0.118 3.882 16 H 0.038 0.962 17 O -0.576 6.576 18 H 0.264 0.736 19 H 0.053 0.947 20 H 0.052 0.948 21 H 0.095 0.905 22 H 0.027 0.973 23 H 0.358 0.642 24 H 0.031 0.969 25 H 0.098 0.902 26 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.232 -2.281 0.944 14.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.190 4.190 3 Si 0.770 3.230 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.167 1.167 7 C -0.536 4.536 8 H 0.042 0.958 9 C -0.007 4.007 10 H 0.044 0.956 11 C -0.145 4.145 12 C -0.070 4.070 13 N -0.320 5.320 14 C -0.093 4.093 15 C 0.058 3.942 16 H 0.056 0.944 17 O -0.381 6.381 18 H 0.073 0.927 19 H 0.072 0.928 20 H 0.071 0.929 21 H 0.114 0.886 22 H 0.045 0.955 23 H 0.178 0.822 24 H 0.049 0.951 25 H 0.116 0.884 26 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 13.244 -2.038 1.304 13.463 hybrid contribution 0.408 0.884 -0.618 1.154 sum 13.652 -1.154 0.686 13.718 Atomic orbital electron populations 1.70063 1.08174 1.27831 1.53480 1.25934 0.95522 1.02970 0.94569 0.85774 0.79433 0.78839 0.78986 1.20150 1.21069 1.16735 1.21118 0.91538 0.92712 1.48183 0.95762 1.19235 0.94053 0.94534 0.92829 0.95607 1.21712 0.94906 1.00918 0.96984 1.22016 0.94704 0.91755 0.98537 1.60109 1.20923 1.44430 1.06537 1.22606 0.95755 1.00809 0.90136 1.21761 0.93056 0.97910 0.81432 0.94406 1.86688 1.80714 1.52763 1.17924 0.92715 0.92826 0.92925 0.88641 0.95467 0.82217 0.95104 0.88375 0.77139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.29 13.96 21.45 0.30 -61.99 15 2 C 0.01 0.35 5.47 84.65 0.46 0.82 15 3 Si 0.95 46.70 27.00 68.60 1.85 48.55 15 4 H -0.28 -13.50 7.11 99.48 0.71 -12.79 15 5 H -0.28 -13.64 7.11 99.48 0.71 -12.94 15 6 H -0.24 -10.96 6.80 99.48 0.68 -10.28 15 7 C -0.50 -29.93 8.58 25.60 0.22 -29.71 15 8 H 0.02 1.63 8.06 -2.91 -0.02 1.61 15 9 C 0.01 0.61 1.57 -11.47 -0.02 0.59 15 10 H 0.03 1.28 5.28 -2.39 -0.01 1.27 15 11 C -0.11 -4.43 5.36 30.64 0.16 -4.27 15 12 C 0.06 1.83 6.55 86.32 0.57 2.40 15 13 N -0.69 -19.27 6.85 -514.01 -3.52 -22.79 15 14 C 0.04 1.11 6.17 86.33 0.53 1.65 15 15 C 0.12 4.84 3.03 30.64 0.09 4.93 15 16 H 0.04 1.64 8.14 -2.38 -0.02 1.62 15 17 O -0.58 -23.92 13.01 -148.98 -1.94 -25.86 15 18 H 0.26 16.10 8.31 -92.71 -0.77 15.33 15 19 H 0.05 2.31 8.14 -2.39 -0.02 2.29 15 20 H 0.05 2.23 8.14 -2.39 -0.02 2.21 15 21 H 0.10 2.43 8.14 -2.39 -0.02 2.41 15 22 H 0.03 0.83 8.14 -2.39 -0.02 0.81 15 23 H 0.36 7.41 8.90 -89.70 -0.80 6.61 15 24 H 0.03 0.95 8.14 -2.39 -0.02 0.93 15 25 H 0.10 2.33 8.14 -2.38 -0.02 2.31 15 26 H 0.38 10.88 9.08 -74.06 -0.67 10.21 15 Total: -1.00 -72.49 215.18 -1.61 -74.10 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -0.32 Total: 11.59 kcal Atomic # 6 Polarization: -25.62 SS G_CDS: 2.02 Total: -23.60 kcal Atomic # 7 Polarization: -81.56 SS G_CDS: -3.22 Total: -84.78 kcal Atomic # 8 Polarization: -23.92 SS G_CDS: -1.94 Total: -25.86 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 1.85 Total: 48.55 kcal Total: -72.49 -1.61 -74.10 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258518669.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.763 kcal (2) G-P(sol) polarization free energy of solvation -72.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds