Wall clock time and date at job start Mon Mar 30 2020 02:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86793 * 119.99858 * 2 1 4 4 H 1.48504 * 109.47068 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47303 * 60.00292 * 3 2 1 6 6 H 1.48494 * 109.47587 * 299.99795 * 3 2 1 7 7 C 1.37875 * 119.99524 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99748 * 175.16327 * 7 2 1 9 9 C 1.50699 * 120.00418 * 355.15740 * 7 2 1 10 10 H 1.08998 * 109.52211 * 35.21847 * 9 7 2 11 11 C 1.53126 * 109.52261 * 155.34132 * 9 7 2 12 12 C 1.53036 * 109.27877 * 177.56046 * 11 9 7 13 13 N 1.46843 * 109.52140 * 300.82195 * 12 11 9 14 14 C 1.46848 * 111.20234 * 61.74397 * 13 12 11 15 15 C 1.53044 * 109.57169 * 298.28582 * 14 13 12 16 16 H 1.09004 * 109.55825 * 179.05160 * 15 14 13 17 17 O 1.42894 * 109.45834 * 299.17694 * 15 14 13 18 18 H 0.97000 * 119.99758 * 185.18195 * 1 2 3 19 19 H 1.08999 * 109.50182 * 297.50082 * 11 9 7 20 20 H 1.08999 * 109.50253 * 57.61749 * 11 9 7 21 21 H 1.08998 * 109.46177 * 60.83527 * 12 11 9 22 22 H 1.08991 * 109.46162 * 180.80589 * 12 11 9 23 23 H 1.00896 * 111.00269 * 297.63919 * 13 12 11 24 24 H 1.09001 * 109.46270 * 58.26652 * 14 13 12 25 25 H 1.09002 * 109.46274 * 178.24057 * 14 13 12 26 26 H 0.96704 * 113.99833 * 299.77007 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 1.2125 6 1 1.8905 2.3964 -1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0816 -1.1958 -0.0794 9 6 1.2550 -2.4969 0.1091 10 1 0.3050 -2.4161 -0.4192 11 6 2.0904 -3.6214 -0.5094 12 6 1.3516 -4.9510 -0.3408 13 7 1.1288 -5.2109 1.0871 14 6 0.2893 -4.1689 1.6920 15 6 0.9950 -2.8152 1.5841 16 1 0.3643 -2.0393 2.0180 17 8 2.2381 -2.8691 2.2868 18 1 -0.4850 -0.8366 0.0759 19 1 2.2417 -3.4211 -1.5701 20 1 3.0563 -3.6756 -0.0072 21 1 0.3917 -4.9008 -0.8549 22 1 1.9502 -5.7557 -0.7674 23 1 2.0049 -5.3004 1.5794 24 1 -0.6656 -4.1224 1.1683 25 1 0.1164 -4.4057 2.7418 26 1 2.1489 -3.0670 3.2292 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258518682.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:04 Heat of formation + Delta-G solvation = -65.379154 kcal Electronic energy + Delta-G solvation = -10519.619155 eV Core-core repulsion = 8597.365372 eV Total energy + Delta-G solvation = -1922.253784 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.54471 -34.53077 -33.35343 -30.25309 -28.88098 -24.75203 -22.10189 -21.93453 -19.40771 -16.89800 -16.42673 -14.76487 -14.18427 -14.06246 -13.72497 -13.33277 -12.59387 -12.09404 -11.93974 -11.12537 -10.93467 -10.79955 -10.67937 -10.11838 -9.78011 -9.63690 -9.16240 -8.73250 -8.30919 -7.58819 -6.32803 -4.01314 3.44938 3.48382 3.63404 4.54492 4.84267 5.25308 5.33124 5.62679 5.71945 5.84000 6.06477 6.18296 6.27475 6.44033 6.47459 6.77542 6.90477 7.21685 7.42227 7.57265 7.85494 8.20585 8.49631 8.55362 8.91478 9.67061 11.04904 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.070670 B = 0.015699 C = 0.015249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.110096 B = 1783.124111 C = 1835.763641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.014 3.986 3 Si 1.074 2.926 4 H -0.290 1.290 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.571 4.571 8 H 0.049 0.951 9 C 0.038 3.962 10 H 0.041 0.959 11 C -0.136 4.136 12 C 0.053 3.947 13 N -0.682 5.682 14 C 0.021 3.979 15 C 0.074 3.926 16 H 0.044 0.956 17 O -0.549 6.549 18 H 0.266 0.734 19 H 0.052 0.948 20 H 0.055 0.945 21 H 0.062 0.938 22 H 0.061 0.939 23 H 0.337 0.663 24 H 0.072 0.928 25 H 0.061 0.939 26 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.721 -6.236 2.650 6.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.188 4.188 3 Si 0.903 3.097 4 H -0.216 1.216 5 H -0.215 1.215 6 H -0.215 1.215 7 C -0.609 4.609 8 H 0.067 0.933 9 C 0.019 3.981 10 H 0.059 0.941 11 C -0.175 4.175 12 C -0.077 4.077 13 N -0.311 5.311 14 C -0.110 4.110 15 C 0.013 3.987 16 H 0.062 0.938 17 O -0.351 6.351 18 H 0.077 0.923 19 H 0.071 0.929 20 H 0.074 0.926 21 H 0.081 0.919 22 H 0.079 0.921 23 H 0.154 0.846 24 H 0.090 0.910 25 H 0.079 0.921 26 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 1.227 -4.889 1.846 5.368 hybrid contribution 0.513 -0.960 0.756 1.326 sum 1.741 -5.850 2.602 6.635 Atomic orbital electron populations 1.70785 1.06774 1.30596 1.47558 1.25839 0.96542 1.02686 0.93767 0.83474 0.74573 0.74866 0.76801 1.21581 1.21493 1.21451 1.21887 0.94608 0.91082 1.53351 0.93277 1.18894 0.96490 0.94408 0.88336 0.94065 1.22157 0.99711 0.95111 1.00535 1.22078 0.99857 0.96673 0.89076 1.60844 1.21122 1.45518 1.03570 1.22791 0.97458 0.91967 0.98745 1.22881 0.84522 0.93778 0.97471 0.93756 1.86677 1.31454 1.94172 1.22752 0.92257 0.92907 0.92602 0.91904 0.92088 0.84574 0.91000 0.92100 0.80711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.84 13.63 55.43 0.76 -27.09 15 2 C 0.01 0.41 5.45 -17.82 -0.10 0.32 15 3 Si 1.07 26.02 29.91 -169.99 -5.08 20.94 15 4 H -0.29 -6.78 7.11 56.52 0.40 -6.38 15 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 15 6 H -0.29 -6.80 7.11 56.52 0.40 -6.40 15 7 C -0.57 -16.38 7.91 -34.44 -0.27 -16.65 15 8 H 0.05 1.46 7.81 -52.49 -0.41 1.05 15 9 C 0.04 0.94 1.73 -91.64 -0.16 0.78 15 10 H 0.04 1.11 6.68 -51.93 -0.35 0.77 15 11 C -0.14 -2.97 5.19 -26.65 -0.14 -3.11 15 12 C 0.05 0.97 6.55 -3.84 -0.03 0.94 15 13 N -0.68 -12.06 6.86 -113.82 -0.78 -12.84 15 14 C 0.02 0.38 6.24 -3.83 -0.02 0.36 15 15 C 0.07 1.65 3.26 -26.65 -0.09 1.56 15 16 H 0.04 1.09 8.14 -51.93 -0.42 0.66 15 17 O -0.55 -11.71 11.83 -35.23 -0.42 -12.13 15 18 H 0.27 7.95 6.66 -40.82 -0.27 7.68 15 19 H 0.05 1.15 8.14 -51.93 -0.42 0.73 15 20 H 0.06 1.27 7.80 -51.93 -0.41 0.86 15 21 H 0.06 1.15 8.14 -51.93 -0.42 0.73 15 22 H 0.06 0.98 8.14 -51.93 -0.42 0.56 15 23 H 0.34 5.76 8.39 -39.29 -0.33 5.43 15 24 H 0.07 1.34 8.14 -51.93 -0.42 0.92 15 25 H 0.06 0.98 8.14 -51.93 -0.42 0.55 15 26 H 0.35 5.67 9.08 45.56 0.41 6.08 15 LS Contribution 215.16 15.07 3.24 3.24 Total: -1.00 -31.12 215.16 -5.77 -36.88 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -2.68 Total: 6.79 kcal Atomic # 6 Polarization: -15.00 SS G_CDS: -0.80 Total: -15.80 kcal Atomic # 7 Polarization: -39.90 SS G_CDS: -0.03 Total: -39.92 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: -0.42 Total: -12.13 kcal Atomic # 14 Polarization: 26.02 SS G_CDS: -5.08 Total: 20.94 kcal Total LS contribution 3.24 Total: 3.24 kcal Total: -31.12 -5.77 -36.88 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258518682.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.497 kcal (2) G-P(sol) polarization free energy of solvation -31.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds