Wall clock time and date at job start Mon Mar 30 2020 02:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86793 * 119.99858 * 2 1 4 4 H 1.48504 * 109.47068 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47303 * 60.00292 * 3 2 1 6 6 H 1.48494 * 109.47587 * 299.99795 * 3 2 1 7 7 C 1.37875 * 119.99524 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99748 * 175.16327 * 7 2 1 9 9 C 1.50699 * 120.00418 * 355.15740 * 7 2 1 10 10 H 1.08998 * 109.52211 * 35.21847 * 9 7 2 11 11 C 1.53126 * 109.52261 * 155.34132 * 9 7 2 12 12 C 1.53036 * 109.27877 * 177.56046 * 11 9 7 13 13 N 1.46843 * 109.52140 * 300.82195 * 12 11 9 14 14 C 1.46848 * 111.20234 * 61.74397 * 13 12 11 15 15 C 1.53044 * 109.57169 * 298.28582 * 14 13 12 16 16 H 1.09004 * 109.55825 * 179.05160 * 15 14 13 17 17 O 1.42894 * 109.45834 * 299.17694 * 15 14 13 18 18 H 0.97000 * 119.99758 * 185.18195 * 1 2 3 19 19 H 1.08999 * 109.50182 * 297.50082 * 11 9 7 20 20 H 1.08999 * 109.50253 * 57.61749 * 11 9 7 21 21 H 1.08998 * 109.46177 * 60.83527 * 12 11 9 22 22 H 1.08991 * 109.46162 * 180.80589 * 12 11 9 23 23 H 1.00896 * 111.00269 * 297.63919 * 13 12 11 24 24 H 1.09001 * 109.46270 * 58.26652 * 14 13 12 25 25 H 1.09002 * 109.46274 * 178.24057 * 14 13 12 26 26 H 0.96704 * 113.99833 * 299.77007 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 1.2125 6 1 1.8905 2.3964 -1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0816 -1.1958 -0.0794 9 6 1.2550 -2.4969 0.1091 10 1 0.3050 -2.4161 -0.4192 11 6 2.0904 -3.6214 -0.5094 12 6 1.3516 -4.9510 -0.3408 13 7 1.1288 -5.2109 1.0871 14 6 0.2893 -4.1689 1.6920 15 6 0.9950 -2.8152 1.5841 16 1 0.3643 -2.0393 2.0180 17 8 2.2381 -2.8691 2.2868 18 1 -0.4850 -0.8366 0.0759 19 1 2.2417 -3.4211 -1.5701 20 1 3.0563 -3.6756 -0.0072 21 1 0.3917 -4.9008 -0.8549 22 1 1.9502 -5.7557 -0.7674 23 1 2.0049 -5.3004 1.5794 24 1 -0.6656 -4.1224 1.1683 25 1 0.1164 -4.4057 2.7418 26 1 2.1489 -3.0670 3.2292 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258518682.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:04 Heat of formation + Delta-G solvation = -90.687666 kcal Electronic energy + Delta-G solvation = -10520.716615 eV Core-core repulsion = 8597.365372 eV Total energy + Delta-G solvation = -1923.351243 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.23592 -36.18149 -35.41810 -32.08155 -30.57580 -26.79491 -23.88447 -23.60578 -21.18667 -18.97424 -18.11120 -16.39651 -15.90255 -15.71635 -15.67646 -15.24976 -14.32210 -13.90277 -13.63229 -12.97326 -12.73666 -12.52464 -12.35381 -11.99989 -11.60063 -11.43097 -10.93421 -10.76597 -10.49639 -9.21349 -8.60905 -6.30880 1.47903 1.56695 1.74062 2.53178 3.15423 3.35801 3.65072 4.06402 4.09718 4.20092 4.41502 4.55850 4.70679 4.74815 4.87512 4.99182 5.12932 5.41490 5.49965 5.99445 6.07625 6.19972 6.45194 6.63142 7.07170 7.44207 8.76260 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.070670 B = 0.015699 C = 0.015249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.110096 B = 1783.124111 C = 1835.763641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.035 4.035 3 Si 1.116 2.884 4 H -0.279 1.279 5 H -0.280 1.280 6 H -0.277 1.277 7 C -0.584 4.584 8 H 0.032 0.968 9 C 0.025 3.975 10 H 0.015 0.985 11 C -0.128 4.128 12 C 0.060 3.940 13 N -0.670 5.670 14 C 0.032 3.968 15 C 0.084 3.916 16 H 0.013 0.987 17 O -0.563 6.563 18 H 0.257 0.743 19 H 0.044 0.956 20 H 0.046 0.954 21 H 0.062 0.938 22 H 0.091 0.909 23 H 0.345 0.655 24 H 0.068 0.932 25 H 0.093 0.907 26 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.227 -7.148 3.231 8.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.232 4.232 3 Si 0.939 3.061 4 H -0.204 1.204 5 H -0.205 1.205 6 H -0.203 1.203 7 C -0.623 4.623 8 H 0.050 0.950 9 C 0.007 3.993 10 H 0.033 0.967 11 C -0.168 4.168 12 C -0.070 4.070 13 N -0.298 5.298 14 C -0.098 4.098 15 C 0.023 3.977 16 H 0.031 0.969 17 O -0.368 6.368 18 H 0.067 0.933 19 H 0.063 0.937 20 H 0.065 0.935 21 H 0.081 0.919 22 H 0.109 0.891 23 H 0.163 0.837 24 H 0.086 0.914 25 H 0.111 0.889 26 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 1.737 -5.833 2.445 6.559 hybrid contribution 0.394 -0.714 0.588 1.005 sum 2.131 -6.547 3.033 7.523 Atomic orbital electron populations 1.70891 1.07514 1.30110 1.49526 1.27161 0.96693 1.06180 0.93170 0.82928 0.74020 0.71658 0.77493 1.20429 1.20548 1.20314 1.22187 0.93971 0.93134 1.52958 0.94971 1.18912 0.95311 0.94418 0.90691 0.96673 1.22061 0.99043 0.96153 0.99520 1.22054 0.99832 0.95311 0.89773 1.60867 1.21455 1.44330 1.03171 1.22682 0.96739 0.89589 1.00819 1.22529 0.84664 0.95354 0.95167 0.96865 1.86599 1.30981 1.94374 1.24892 0.93299 0.93708 0.93547 0.91897 0.89061 0.83705 0.91370 0.88858 0.77873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.02 13.63 21.45 0.29 -57.73 15 2 C -0.04 -2.06 5.45 84.65 0.46 -1.60 15 3 Si 1.12 52.37 29.91 68.60 2.05 54.42 15 4 H -0.28 -12.45 7.11 99.48 0.71 -11.74 15 5 H -0.28 -12.65 7.11 99.48 0.71 -11.95 15 6 H -0.28 -12.48 7.11 99.48 0.71 -11.77 15 7 C -0.58 -34.02 7.91 25.60 0.20 -33.82 15 8 H 0.03 1.93 7.81 -2.91 -0.02 1.91 15 9 C 0.03 1.29 1.73 -11.46 -0.02 1.27 15 10 H 0.02 0.84 6.68 -2.39 -0.02 0.83 15 11 C -0.13 -5.52 5.19 30.65 0.16 -5.37 15 12 C 0.06 2.05 6.55 86.33 0.57 2.62 15 13 N -0.67 -21.59 6.86 -514.01 -3.53 -25.11 15 14 C 0.03 1.11 6.24 86.33 0.54 1.65 15 15 C 0.08 3.68 3.26 30.65 0.10 3.78 15 16 H 0.01 0.66 8.14 -2.38 -0.02 0.64 15 17 O -0.56 -23.23 11.83 -148.98 -1.76 -24.99 15 18 H 0.26 15.82 6.66 -92.71 -0.62 15.20 15 19 H 0.04 1.94 8.14 -2.39 -0.02 1.93 15 20 H 0.05 2.06 7.80 -2.39 -0.02 2.04 15 21 H 0.06 2.17 8.14 -2.39 -0.02 2.15 15 22 H 0.09 2.62 8.14 -2.39 -0.02 2.60 15 23 H 0.35 10.55 8.39 -89.70 -0.75 9.80 15 24 H 0.07 2.43 8.14 -2.39 -0.02 2.41 15 25 H 0.09 2.66 8.14 -2.39 -0.02 2.64 15 26 H 0.37 11.25 9.08 -74.05 -0.67 10.58 15 Total: -1.00 -66.59 215.16 -1.03 -67.62 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -0.10 Total: 17.25 kcal Atomic # 6 Polarization: -33.47 SS G_CDS: 2.01 Total: -31.46 kcal Atomic # 7 Polarization: -79.61 SS G_CDS: -3.23 Total: -82.84 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: -1.76 Total: -24.99 kcal Atomic # 14 Polarization: 52.37 SS G_CDS: 2.05 Total: 54.42 kcal Total: -66.59 -1.03 -67.62 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258518682.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.069 kcal (2) G-P(sol) polarization free energy of solvation -66.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds