Wall clock time and date at job start Mon Mar 30 2020 02:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 H 1.09001 * 109.52136 * 59.58946 * 9 7 2 11 11 C 1.53123 * 109.52073 * 299.40303 * 9 7 2 12 12 C 1.53031 * 109.27586 * 182.44289 * 11 9 7 13 13 N 1.46848 * 109.52746 * 59.17723 * 12 11 9 14 14 C 1.46842 * 111.19688 * 298.25933 * 13 12 11 15 15 C 1.53036 * 109.52476 * 61.74111 * 14 13 12 16 16 H 1.09000 * 109.53865 * 60.77876 * 15 14 13 17 17 O 1.42903 * 109.50340 * 180.87880 * 15 14 13 18 18 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 19 19 H 1.08999 * 109.50425 * 302.38534 * 11 9 7 20 20 H 1.08997 * 109.50292 * 62.50214 * 11 9 7 21 21 H 1.09006 * 109.46173 * 299.16238 * 12 11 9 22 22 H 1.09007 * 109.45509 * 179.19172 * 12 11 9 23 23 H 1.00896 * 111.00054 * 174.15995 * 13 12 11 24 24 H 1.08998 * 109.46258 * 301.72129 * 14 13 12 25 25 H 1.09000 * 109.46517 * 181.75538 * 14 13 12 26 26 H 0.96692 * 113.99987 * 299.79976 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 1 3.8721 -0.6766 0.8948 11 6 4.0285 -0.4820 -1.2474 12 6 5.5576 -0.5385 -1.2660 13 7 5.9971 -1.9397 -1.2611 14 6 5.5526 -2.6313 -0.0444 15 6 4.0232 -2.6373 0.0108 16 1 3.6292 -3.1661 -0.8571 17 8 3.5914 -3.2924 1.2052 18 1 -0.4849 0.8400 0.0004 19 1 3.6351 -0.9766 -2.1354 20 1 3.7029 0.5582 -1.2352 21 1 5.9506 -0.0316 -0.3847 22 1 5.9282 -0.0448 -2.1644 23 1 6.9981 -2.0051 -1.3690 24 1 5.9456 -2.1145 0.8312 25 1 5.9196 -3.6576 -0.0553 26 1 3.8803 -4.2125 1.2755 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258518696.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:05 Heat of formation + Delta-G solvation = -49.503974 kcal Electronic energy + Delta-G solvation = -10457.513082 eV Core-core repulsion = 8535.947698 eV Total energy + Delta-G solvation = -1921.565384 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.39613 -35.11900 -33.13724 -30.86246 -29.01425 -25.37992 -22.43666 -21.45819 -18.94098 -16.88915 -16.67194 -15.69159 -14.41814 -14.20844 -13.52467 -13.40666 -12.87544 -12.28609 -11.85430 -11.80136 -11.25032 -10.86566 -10.37836 -10.02448 -9.83206 -9.36578 -9.05357 -8.86019 -8.48064 -8.11545 -5.98677 -3.95254 3.28747 3.39539 3.41807 4.44863 4.47221 5.15157 5.38980 5.42940 5.53762 5.77913 5.80989 5.90772 6.10027 6.29686 6.46971 6.72052 6.85980 7.00402 7.30293 7.51284 7.66490 7.82718 8.44447 8.64581 9.09015 9.63030 11.15218 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.051197 B = 0.020766 C = 0.016080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.780354 B = 1348.023302 C = 1740.857106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.065 3.935 3 Si 0.884 3.116 4 H -0.278 1.278 5 H -0.297 1.297 6 H -0.268 1.268 7 C -0.496 4.496 8 H 0.076 0.924 9 C 0.020 3.980 10 H 0.028 0.972 11 C -0.118 4.118 12 C 0.052 3.948 13 N -0.683 5.683 14 C 0.025 3.975 15 C 0.124 3.876 16 H 0.056 0.944 17 O -0.551 6.551 18 H 0.262 0.738 19 H 0.071 0.929 20 H 0.055 0.945 21 H 0.024 0.976 22 H 0.066 0.934 23 H 0.334 0.666 24 H 0.031 0.969 25 H 0.064 0.936 26 H 0.356 0.644 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.469 -2.397 -1.454 11.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.715 3.285 4 H -0.205 1.205 5 H -0.224 1.224 6 H -0.194 1.194 7 C -0.534 4.534 8 H 0.094 0.906 9 C 0.001 3.999 10 H 0.046 0.954 11 C -0.155 4.155 12 C -0.077 4.077 13 N -0.315 5.315 14 C -0.104 4.104 15 C 0.064 3.936 16 H 0.074 0.926 17 O -0.352 6.352 18 H 0.072 0.928 19 H 0.090 0.910 20 H 0.073 0.927 21 H 0.042 0.958 22 H 0.084 0.916 23 H 0.150 0.850 24 H 0.049 0.951 25 H 0.083 0.917 26 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 10.476 -1.904 -1.700 10.783 hybrid contribution 1.327 0.832 0.515 1.648 sum 11.803 -1.072 -1.186 11.911 Atomic orbital electron populations 1.69897 1.06172 1.26672 1.51496 1.25018 0.94729 0.98827 0.94931 0.86898 0.79882 0.83947 0.77796 1.20534 1.22426 1.19363 1.20951 0.88340 0.94575 1.49565 0.90559 1.19171 0.97493 0.89867 0.93330 0.95399 1.22007 0.91773 1.00267 1.01497 1.22090 0.98233 0.87936 0.99395 1.60194 1.17266 1.15149 1.38877 1.22768 0.98907 0.97923 0.90841 1.21782 0.89269 0.96012 0.86500 0.92600 1.86753 1.78319 1.27545 1.42625 0.92804 0.90995 0.92716 0.95792 0.91552 0.84953 0.95097 0.91731 0.79996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.56 13.96 55.43 0.77 -27.79 15 2 C 0.07 1.96 5.45 -17.82 -0.10 1.86 15 3 Si 0.88 22.52 24.37 -169.99 -4.14 18.37 15 4 H -0.28 -6.79 6.90 56.52 0.39 -6.40 15 5 H -0.30 -7.56 7.11 56.52 0.40 -7.16 15 6 H -0.27 -6.59 6.52 56.52 0.37 -6.23 15 7 C -0.50 -14.63 8.86 -34.44 -0.30 -14.93 15 8 H 0.08 2.46 7.99 -52.49 -0.42 2.05 15 9 C 0.02 0.50 1.48 -91.65 -0.14 0.37 15 10 H 0.03 0.73 7.19 -51.93 -0.37 0.36 15 11 C -0.12 -2.60 4.84 -26.65 -0.13 -2.73 15 12 C 0.05 0.93 6.55 -3.84 -0.03 0.91 15 13 N -0.68 -11.05 6.85 -113.82 -0.78 -11.83 15 14 C 0.03 0.43 6.18 -3.84 -0.02 0.40 15 15 C 0.12 2.60 2.99 -26.65 -0.08 2.52 15 16 H 0.06 1.21 8.14 -51.93 -0.42 0.79 15 17 O -0.55 -11.48 13.02 -35.23 -0.46 -11.94 15 18 H 0.26 7.75 8.31 -40.82 -0.34 7.42 15 19 H 0.07 1.61 8.14 -51.93 -0.42 1.19 15 20 H 0.05 1.26 3.40 -51.93 -0.18 1.09 15 21 H 0.02 0.42 8.14 -51.93 -0.42 0.00 15 22 H 0.07 1.03 8.14 -51.93 -0.42 0.60 15 23 H 0.33 4.31 8.90 -39.29 -0.35 3.96 15 24 H 0.03 0.53 8.14 -51.93 -0.42 0.11 15 25 H 0.06 0.90 8.14 -51.93 -0.42 0.48 15 26 H 0.36 5.25 9.08 45.56 0.41 5.66 15 LS Contribution 208.77 15.07 3.15 3.15 Total: -1.00 -32.86 208.77 -4.88 -37.73 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -2.62 Total: 3.91 kcal Atomic # 6 Polarization: -10.81 SS G_CDS: -0.80 Total: -11.60 kcal Atomic # 7 Polarization: -39.62 SS G_CDS: -0.01 Total: -39.62 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: -0.46 Total: -11.94 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.14 Total: 18.37 kcal Total LS contribution 3.15 Total: 3.15 kcal Total: -32.86 -4.88 -37.73 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258518696.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.773 kcal (2) G-P(sol) polarization free energy of solvation -32.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds