Wall clock time and date at job start Mon Mar 30 2020 02:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 H 1.09001 * 109.52136 * 59.58946 * 9 7 2 11 11 C 1.53123 * 109.52073 * 299.40303 * 9 7 2 12 12 C 1.53031 * 109.27586 * 182.44289 * 11 9 7 13 13 N 1.46848 * 109.52746 * 59.17723 * 12 11 9 14 14 C 1.46842 * 111.19688 * 298.25933 * 13 12 11 15 15 C 1.53036 * 109.52476 * 61.74111 * 14 13 12 16 16 H 1.09000 * 109.53865 * 60.77876 * 15 14 13 17 17 O 1.42903 * 109.50340 * 180.87880 * 15 14 13 18 18 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 19 19 H 1.08999 * 109.50425 * 302.38534 * 11 9 7 20 20 H 1.08997 * 109.50292 * 62.50214 * 11 9 7 21 21 H 1.09006 * 109.46173 * 299.16238 * 12 11 9 22 22 H 1.09007 * 109.45509 * 179.19172 * 12 11 9 23 23 H 1.00896 * 111.00054 * 174.15995 * 13 12 11 24 24 H 1.08998 * 109.46258 * 301.72129 * 14 13 12 25 25 H 1.09000 * 109.46517 * 181.75538 * 14 13 12 26 26 H 0.96692 * 113.99987 * 299.79976 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 1 3.8721 -0.6766 0.8948 11 6 4.0285 -0.4820 -1.2474 12 6 5.5576 -0.5385 -1.2660 13 7 5.9971 -1.9397 -1.2611 14 6 5.5526 -2.6313 -0.0444 15 6 4.0232 -2.6373 0.0108 16 1 3.6292 -3.1661 -0.8571 17 8 3.5914 -3.2924 1.2052 18 1 -0.4849 0.8400 0.0004 19 1 3.6351 -0.9766 -2.1354 20 1 3.7029 0.5582 -1.2352 21 1 5.9506 -0.0316 -0.3847 22 1 5.9282 -0.0448 -2.1644 23 1 6.9981 -2.0051 -1.3690 24 1 5.9456 -2.1145 0.8312 25 1 5.9196 -3.6576 -0.0553 26 1 3.8803 -4.2125 1.2755 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258518696.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:05 Heat of formation + Delta-G solvation = -78.774599 kcal Electronic energy + Delta-G solvation = -10458.782352 eV Core-core repulsion = 8535.947698 eV Total energy + Delta-G solvation = -1922.834654 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.97814 -36.67781 -35.16858 -32.80637 -30.54674 -27.34514 -24.05601 -23.16833 -20.63560 -18.92240 -18.38370 -17.30661 -16.23330 -15.77063 -15.26407 -14.93905 -14.77565 -14.00766 -13.56033 -13.41536 -13.02473 -12.70415 -12.30949 -11.76033 -11.71029 -11.26767 -10.91076 -10.70616 -10.63417 -9.41234 -8.29462 -6.31887 1.26230 1.33216 1.43502 2.31350 3.01995 3.17229 3.79110 3.99338 4.05818 4.24219 4.36471 4.46625 4.62049 4.79310 4.84604 4.99962 5.15381 5.24959 5.63385 5.68508 5.95981 6.30299 6.59024 6.72060 7.12836 7.31038 8.88372 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.051197 B = 0.020766 C = 0.016080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.780354 B = 1348.023302 C = 1740.857106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.003 3.997 3 Si 0.953 3.047 4 H -0.257 1.257 5 H -0.297 1.297 6 H -0.252 1.252 7 C -0.507 4.507 8 H 0.026 0.974 9 C 0.015 3.985 10 H 0.014 0.986 11 C -0.117 4.117 12 C 0.059 3.941 13 N -0.684 5.684 14 C 0.038 3.962 15 C 0.122 3.878 16 H 0.041 0.959 17 O -0.577 6.577 18 H 0.265 0.735 19 H 0.060 0.940 20 H 0.046 0.954 21 H 0.030 0.970 22 H 0.097 0.903 23 H 0.360 0.640 24 H 0.032 0.968 25 H 0.101 0.899 26 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.428 -1.803 -1.918 14.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.193 4.193 3 Si 0.780 3.220 4 H -0.182 1.182 5 H -0.225 1.225 6 H -0.176 1.176 7 C -0.545 4.545 8 H 0.045 0.955 9 C -0.004 4.004 10 H 0.032 0.968 11 C -0.155 4.155 12 C -0.071 4.071 13 N -0.319 5.319 14 C -0.092 4.092 15 C 0.063 3.937 16 H 0.060 0.940 17 O -0.383 6.383 18 H 0.074 0.926 19 H 0.079 0.921 20 H 0.064 0.936 21 H 0.048 0.952 22 H 0.115 0.885 23 H 0.180 0.820 24 H 0.050 0.950 25 H 0.119 0.881 26 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 13.482 -1.349 -2.174 13.722 hybrid contribution 0.318 0.503 0.685 0.908 sum 13.799 -0.846 -1.489 13.905 Atomic orbital electron populations 1.70066 1.08245 1.27935 1.53226 1.25976 0.95597 1.03227 0.94478 0.85777 0.78820 0.78357 0.79080 1.18224 1.22495 1.17587 1.21242 0.91342 0.92766 1.49142 0.95548 1.19175 0.94126 0.92966 0.94113 0.96790 1.21871 0.95463 0.98961 0.99195 1.21991 0.94547 0.89265 1.01253 1.60091 1.19297 1.14108 1.38355 1.22587 0.95078 1.00274 0.91246 1.21655 0.92519 0.93553 0.85981 0.94050 1.86673 1.79249 1.29857 1.42515 0.92613 0.92087 0.93610 0.95220 0.88456 0.82018 0.94999 0.88114 0.76951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.41 13.96 21.45 0.30 -62.11 15 2 C 0.00 0.19 5.45 84.66 0.46 0.65 15 3 Si 0.95 46.49 24.37 68.60 1.67 48.17 15 4 H -0.26 -11.56 6.90 99.48 0.69 -10.87 15 5 H -0.30 -14.41 7.11 99.48 0.71 -13.70 15 6 H -0.25 -11.49 6.52 99.48 0.65 -10.84 15 7 C -0.51 -30.91 8.86 25.60 0.23 -30.68 15 8 H 0.03 1.80 7.99 -2.91 -0.02 1.78 15 9 C 0.02 0.74 1.48 -11.46 -0.02 0.73 15 10 H 0.01 0.72 7.19 -2.39 -0.02 0.71 15 11 C -0.12 -4.95 4.84 30.65 0.15 -4.80 15 12 C 0.06 1.84 6.55 86.32 0.57 2.41 15 13 N -0.68 -19.16 6.85 -514.01 -3.52 -22.68 15 14 C 0.04 1.14 6.18 86.33 0.53 1.67 15 15 C 0.12 5.02 2.99 30.65 0.09 5.11 15 16 H 0.04 1.79 8.14 -2.39 -0.02 1.77 15 17 O -0.58 -23.84 13.02 -148.98 -1.94 -25.78 15 18 H 0.27 16.14 8.31 -92.71 -0.77 15.37 15 19 H 0.06 2.67 8.14 -2.39 -0.02 2.65 15 20 H 0.05 1.99 3.40 -2.39 -0.01 1.99 15 21 H 0.03 0.92 8.14 -2.38 -0.02 0.90 15 22 H 0.10 2.50 8.14 -2.38 -0.02 2.49 15 23 H 0.36 7.34 8.90 -89.70 -0.80 6.54 15 24 H 0.03 0.98 8.14 -2.39 -0.02 0.96 15 25 H 0.10 2.34 8.14 -2.39 -0.02 2.32 15 26 H 0.38 10.76 9.08 -74.06 -0.67 10.09 15 Total: -1.00 -73.33 208.77 -1.84 -75.17 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -0.36 Total: 12.15 kcal Atomic # 6 Polarization: -26.92 SS G_CDS: 2.01 Total: -24.91 kcal Atomic # 7 Polarization: -81.58 SS G_CDS: -3.22 Total: -84.79 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -1.94 Total: -25.78 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 1.67 Total: 48.17 kcal Total: -73.33 -1.84 -75.17 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258518696.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.603 kcal (2) G-P(sol) polarization free energy of solvation -73.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds