Wall clock time and date at job start Mon Mar 30 2020 02:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 119.99617 * 2 1 4 4 H 1.48496 * 109.46756 * 239.99517 * 3 2 1 5 5 H 1.48491 * 109.47444 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46795 * 120.00177 * 3 2 1 7 7 C 1.37873 * 120.00115 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99874 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99966 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.52512 * 300.00431 * 9 7 2 11 11 C 1.53095 * 109.52202 * 60.13048 * 9 7 2 12 12 O 1.42900 * 109.41538 * 177.57433 * 11 9 7 13 13 C 1.42896 * 114.09793 * 298.84054 * 12 11 9 14 14 C 1.53089 * 109.41625 * 61.16321 * 13 12 11 15 15 C 1.53183 * 109.16135 * 302.38470 * 14 13 12 16 16 H 1.08993 * 109.54521 * 297.12059 * 15 14 13 17 17 N 1.46894 * 109.54361 * 176.84675 * 15 14 13 18 18 H 0.97006 * 120.00305 * 359.97438 * 1 2 3 19 19 H 1.08999 * 109.47454 * 297.56037 * 11 9 7 20 20 H 1.08998 * 109.47991 * 57.57933 * 11 9 7 21 21 H 1.09010 * 109.47819 * 181.14042 * 13 12 11 22 22 H 1.09000 * 109.48272 * 301.17473 * 13 12 11 23 23 H 1.08993 * 109.52588 * 62.29017 * 14 13 12 24 24 H 1.08999 * 109.52597 * 182.42616 * 14 13 12 25 25 H 1.00899 * 110.99773 * 60.45156 * 17 15 14 26 26 H 1.00903 * 110.99973 * 184.40329 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.6243 -2.5579 0.8894 11 6 0.3724 -2.5826 -1.2515 12 8 -0.2977 -3.8444 -1.2780 13 6 0.5805 -4.9704 -1.3307 14 6 1.4674 -4.9830 -0.0830 15 6 2.2445 -3.6652 -0.0051 16 1 2.9038 -3.5790 -0.8687 17 7 3.0413 -3.6367 1.2286 18 1 -0.4851 0.8401 0.0004 19 1 -0.3646 -1.7798 -1.2321 20 1 0.9952 -2.4828 -2.1404 21 1 -0.0068 -5.8880 -1.3685 22 1 1.2061 -4.9022 -2.2207 23 1 0.8452 -5.0920 0.8052 24 1 2.1674 -5.8165 -0.1419 25 1 3.7042 -4.3970 1.2485 26 1 3.5067 -2.7481 1.3380 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258544146.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:19 Heat of formation + Delta-G solvation = -60.137991 kcal Electronic energy + Delta-G solvation = -10426.731552 eV Core-core repulsion = 8504.705042 eV Total energy + Delta-G solvation = -1922.026510 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.36884 -34.48798 -32.87736 -29.86033 -28.97545 -25.06985 -22.60303 -21.87134 -18.90083 -16.52100 -15.30488 -15.08041 -14.60192 -14.20599 -14.05245 -13.49193 -12.35531 -12.11909 -11.82088 -11.06141 -10.95096 -10.68040 -10.50081 -10.28939 -10.16739 -9.12342 -8.97543 -8.59827 -8.27316 -7.80651 -6.06266 -4.12112 3.28324 3.33906 3.35263 4.37508 4.94431 5.19706 5.35028 5.66154 5.79292 5.95492 6.13283 6.29761 6.37818 6.62944 6.83111 6.86003 7.10101 7.58711 7.71290 7.88895 8.08605 8.21763 8.30573 8.50248 8.90161 9.52044 11.00931 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.060590 B = 0.016937 C = 0.014061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.014951 B = 1652.798663 C = 1990.842008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.062 3.938 3 Si 0.895 3.105 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.514 4.514 8 H 0.053 0.947 9 C 0.027 3.973 10 H 0.044 0.956 11 C 0.063 3.937 12 O -0.399 6.399 13 C 0.066 3.934 14 C -0.147 4.147 15 C 0.096 3.904 16 H 0.018 0.982 17 N -0.841 5.841 18 H 0.264 0.736 19 H 0.122 0.878 20 H 0.021 0.979 21 H 0.077 0.923 22 H 0.035 0.965 23 H 0.072 0.928 24 H 0.051 0.949 25 H 0.317 0.683 26 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.458 -5.582 -1.672 6.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.139 4.139 3 Si 0.722 3.278 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.553 4.553 8 H 0.071 0.929 9 C 0.008 3.992 10 H 0.062 0.938 11 C -0.013 4.013 12 O -0.319 6.319 13 C -0.012 4.012 14 C -0.185 4.185 15 C -0.015 4.015 16 H 0.036 0.964 17 N -0.370 5.370 18 H 0.074 0.926 19 H 0.140 0.860 20 H 0.040 0.960 21 H 0.095 0.905 22 H 0.053 0.947 23 H 0.090 0.910 24 H 0.070 0.930 25 H 0.127 0.873 26 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 2.402 -5.547 -1.291 6.181 hybrid contribution 1.704 1.085 -0.640 2.120 sum 4.107 -4.462 -1.931 6.364 Atomic orbital electron populations 1.69829 1.05873 1.26895 1.50154 1.24995 0.94913 0.99203 0.94835 0.86616 0.79574 0.83034 0.78536 1.20387 1.21178 1.20202 1.20960 0.92548 0.90396 1.51359 0.92866 1.19287 0.92989 0.91414 0.95552 0.93828 1.23115 0.97996 0.83129 0.97056 1.87863 1.33986 1.15165 1.94849 1.22341 0.92761 0.90256 0.95855 1.22241 0.99058 0.97578 0.99629 1.21465 0.94921 0.95720 0.89392 0.96401 1.58721 1.30508 1.08017 1.39783 0.92616 0.85996 0.96019 0.90484 0.94662 0.90955 0.93047 0.87284 0.83708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.39 11.36 55.43 0.63 -24.76 15 2 C 0.06 1.71 5.31 -17.82 -0.09 1.61 15 3 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 15 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 15 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 15 7 C -0.51 -13.89 7.89 -34.44 -0.27 -14.16 15 8 H 0.05 1.39 7.05 -52.49 -0.37 1.02 15 9 C 0.03 0.68 1.99 -91.63 -0.18 0.50 15 10 H 0.04 1.27 8.14 -51.93 -0.42 0.85 15 11 C 0.06 1.59 5.87 37.21 0.22 1.81 15 12 O -0.40 -9.27 10.76 -35.23 -0.38 -9.65 15 13 C 0.07 1.23 6.84 37.20 0.25 1.49 15 14 C -0.15 -2.76 5.72 -26.59 -0.15 -2.91 15 15 C 0.10 2.06 2.77 -67.53 -0.19 1.87 15 16 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 15 17 N -0.84 -16.51 9.25 -4.51 -0.04 -16.55 15 18 H 0.26 7.19 8.31 -40.82 -0.34 6.85 15 19 H 0.12 3.37 6.15 -51.93 -0.32 3.05 15 20 H 0.02 0.53 8.14 -51.93 -0.42 0.11 15 21 H 0.08 1.22 8.14 -51.92 -0.42 0.80 15 22 H 0.04 0.62 8.14 -51.93 -0.42 0.20 15 23 H 0.07 1.44 8.14 -51.93 -0.42 1.02 15 24 H 0.05 0.82 8.14 -51.93 -0.42 0.39 15 25 H 0.32 5.16 9.04 -39.29 -0.36 4.81 15 26 H 0.35 7.03 7.59 -39.29 -0.30 6.74 15 LS Contribution 213.75 15.07 3.22 3.22 Total: -1.00 -28.69 213.75 -5.44 -34.13 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -3.44 Total: 7.42 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: -0.42 Total: -9.80 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: 0.59 Total: -41.31 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: -0.38 Total: -9.65 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 3.22 Total: 3.22 kcal Total: -28.69 -5.44 -34.13 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258544146.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.004 kcal (2) G-P(sol) polarization free energy of solvation -28.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds