Wall clock time and date at job start Mon Mar 30 2020 02:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 119.99617 * 2 1 4 4 H 1.48496 * 109.46756 * 239.99517 * 3 2 1 5 5 H 1.48491 * 109.47444 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46795 * 120.00177 * 3 2 1 7 7 C 1.37873 * 120.00115 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99874 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99966 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.52512 * 300.00431 * 9 7 2 11 11 C 1.53095 * 109.52202 * 60.13048 * 9 7 2 12 12 O 1.42900 * 109.41538 * 177.57433 * 11 9 7 13 13 C 1.42896 * 114.09793 * 298.84054 * 12 11 9 14 14 C 1.53089 * 109.41625 * 61.16321 * 13 12 11 15 15 C 1.53183 * 109.16135 * 302.38470 * 14 13 12 16 16 H 1.08993 * 109.54521 * 297.12059 * 15 14 13 17 17 N 1.46894 * 109.54361 * 176.84675 * 15 14 13 18 18 H 0.97006 * 120.00305 * 359.97438 * 1 2 3 19 19 H 1.08999 * 109.47454 * 297.56037 * 11 9 7 20 20 H 1.08998 * 109.47991 * 57.57933 * 11 9 7 21 21 H 1.09010 * 109.47819 * 181.14042 * 13 12 11 22 22 H 1.09000 * 109.48272 * 301.17473 * 13 12 11 23 23 H 1.08993 * 109.52588 * 62.29017 * 14 13 12 24 24 H 1.08999 * 109.52597 * 182.42616 * 14 13 12 25 25 H 1.00899 * 110.99773 * 60.45156 * 17 15 14 26 26 H 1.00903 * 110.99973 * 184.40329 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.6243 -2.5579 0.8894 11 6 0.3724 -2.5826 -1.2515 12 8 -0.2977 -3.8444 -1.2780 13 6 0.5805 -4.9704 -1.3307 14 6 1.4674 -4.9830 -0.0830 15 6 2.2445 -3.6652 -0.0051 16 1 2.9038 -3.5790 -0.8687 17 7 3.0413 -3.6367 1.2286 18 1 -0.4851 0.8401 0.0004 19 1 -0.3646 -1.7798 -1.2321 20 1 0.9952 -2.4828 -2.1404 21 1 -0.0068 -5.8880 -1.3685 22 1 1.2061 -4.9022 -2.2207 23 1 0.8452 -5.0920 0.8052 24 1 2.1674 -5.8165 -0.1419 25 1 3.7042 -4.3970 1.2485 26 1 3.5067 -2.7481 1.3380 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258544146.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:19 Heat of formation + Delta-G solvation = -81.800172 kcal Electronic energy + Delta-G solvation = -10427.670895 eV Core-core repulsion = 8504.705042 eV Total energy + Delta-G solvation = -1922.965852 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.13012 -36.26386 -34.83640 -31.60088 -30.76451 -27.07088 -24.33614 -23.66772 -20.67739 -18.56502 -17.11914 -16.81790 -16.34409 -15.98581 -15.76662 -15.22687 -14.16698 -13.95474 -13.51464 -12.92263 -12.73581 -12.47955 -12.32805 -12.23556 -11.85424 -10.99461 -10.86553 -10.57437 -10.19782 -9.41165 -8.13843 -6.27527 1.42567 1.43819 1.51629 2.41116 3.10385 3.29657 3.76205 4.11596 4.22552 4.39428 4.56146 4.65496 4.73902 4.89232 5.03632 5.20890 5.27538 5.52188 5.72531 5.87041 6.17636 6.44579 6.58903 6.84170 6.86169 7.40803 8.92606 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.060590 B = 0.016937 C = 0.014061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.014951 B = 1652.798663 C = 1990.842008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.011 3.989 3 Si 0.961 3.039 4 H -0.270 1.270 5 H -0.286 1.286 6 H -0.270 1.270 7 C -0.528 4.528 8 H 0.060 0.940 9 C 0.026 3.974 10 H -0.003 1.003 11 C 0.075 3.925 12 O -0.418 6.418 13 C 0.056 3.944 14 C -0.140 4.140 15 C 0.099 3.901 16 H 0.020 0.980 17 N -0.844 5.844 18 H 0.263 0.737 19 H 0.089 0.911 20 H 0.024 0.976 21 H 0.113 0.887 22 H 0.051 0.949 23 H 0.057 0.943 24 H 0.091 0.909 25 H 0.340 0.660 26 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.830 -6.388 -2.021 8.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.188 4.188 3 Si 0.787 3.213 4 H -0.195 1.195 5 H -0.212 1.212 6 H -0.195 1.195 7 C -0.566 4.566 8 H 0.078 0.922 9 C 0.007 3.993 10 H 0.015 0.985 11 C -0.002 4.002 12 O -0.337 6.337 13 C -0.020 4.020 14 C -0.178 4.178 15 C -0.013 4.013 16 H 0.038 0.962 17 N -0.375 5.375 18 H 0.073 0.927 19 H 0.107 0.893 20 H 0.042 0.958 21 H 0.130 0.870 22 H 0.069 0.931 23 H 0.076 0.924 24 H 0.109 0.891 25 H 0.153 0.847 26 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 3.793 -6.385 -1.638 7.605 hybrid contribution 1.267 1.254 -0.519 1.856 sum 5.059 -5.131 -2.157 7.522 Atomic orbital electron populations 1.69991 1.07422 1.27590 1.51014 1.25836 0.95679 1.02785 0.94503 0.85560 0.78263 0.78640 0.78879 1.19463 1.21175 1.19505 1.21307 0.92992 0.91296 1.51012 0.92227 1.19195 0.93368 0.93145 0.93604 0.98505 1.22725 0.96899 0.83674 0.96893 1.87814 1.35413 1.15526 1.94986 1.22716 0.93189 0.89692 0.96448 1.22192 0.99290 0.97349 0.99009 1.21336 0.94397 0.95404 0.90128 0.96179 1.58637 1.31264 1.08733 1.38884 0.92749 0.89260 0.95793 0.86950 0.93067 0.92441 0.89076 0.84744 0.84187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.85 11.36 21.45 0.24 -53.61 15 2 C 0.01 0.59 5.31 84.65 0.45 1.04 15 3 Si 0.96 43.08 29.54 68.60 2.03 45.10 15 4 H -0.27 -11.63 7.11 99.48 0.71 -10.92 15 5 H -0.29 -12.72 7.11 99.48 0.71 -12.01 15 6 H -0.27 -11.73 7.11 99.48 0.71 -11.03 15 7 C -0.53 -28.62 7.89 25.60 0.20 -28.41 15 8 H 0.06 3.08 7.05 -2.91 -0.02 3.06 15 9 C 0.03 1.34 1.99 -11.45 -0.02 1.32 15 10 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 15 11 C 0.07 3.82 5.87 72.01 0.42 4.24 15 12 O -0.42 -19.20 10.76 -148.98 -1.60 -20.80 15 13 C 0.06 1.96 6.84 72.01 0.49 2.46 15 14 C -0.14 -4.91 5.72 30.69 0.18 -4.73 15 15 C 0.10 4.09 2.77 45.04 0.12 4.21 15 16 H 0.02 0.83 8.14 -2.39 -0.02 0.81 15 17 N -0.84 -31.73 9.25 -168.18 -1.56 -33.29 15 18 H 0.26 14.66 8.31 -92.70 -0.77 13.89 15 19 H 0.09 5.12 6.15 -2.39 -0.01 5.11 15 20 H 0.02 1.18 8.14 -2.39 -0.02 1.16 15 21 H 0.11 3.13 8.14 -2.38 -0.02 3.11 15 22 H 0.05 1.64 8.14 -2.39 -0.02 1.62 15 23 H 0.06 2.19 8.14 -2.39 -0.02 2.17 15 24 H 0.09 2.49 8.14 -2.39 -0.02 2.47 15 25 H 0.34 10.10 9.04 -89.69 -0.81 9.29 15 26 H 0.34 13.48 7.59 -89.69 -0.68 12.80 15 Total: -1.00 -61.80 213.75 0.64 -61.16 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: -0.31 Total: 21.31 kcal Atomic # 6 Polarization: -21.72 SS G_CDS: 1.84 Total: -19.87 kcal Atomic # 7 Polarization: -85.58 SS G_CDS: -1.31 Total: -86.90 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: -1.60 Total: -20.80 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Total: -61.80 0.64 -61.16 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258544146.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.640 kcal (2) G-P(sol) polarization free energy of solvation -61.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds