Wall clock time and date at job start Mon Mar 30 2020 02:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00246 * 2 1 4 4 H 1.48500 * 109.47346 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.47203 * 120.00494 * 3 2 1 6 6 H 1.48506 * 109.46968 * 240.00526 * 3 2 1 7 7 C 1.37879 * 119.99864 * 180.28114 * 2 1 3 8 8 H 1.07999 * 119.99933 * 17.43682 * 7 2 1 9 9 C 1.50701 * 120.00143 * 197.43934 * 7 2 1 10 10 H 1.09003 * 109.51878 * 305.78040 * 9 7 2 11 11 C 1.53091 * 109.52249 * 65.96645 * 9 7 2 12 12 O 1.42905 * 109.41528 * 177.51288 * 11 9 7 13 13 C 1.42898 * 114.10001 * 298.84585 * 12 11 9 14 14 C 1.53099 * 109.41696 * 61.15559 * 13 12 11 15 15 C 1.53176 * 109.16052 * 302.39193 * 14 13 12 16 16 H 1.09000 * 109.54117 * 176.84245 * 15 14 13 17 17 N 1.46896 * 109.54732 * 297.11207 * 15 14 13 18 18 H 0.97002 * 120.00427 * 174.64202 * 1 2 3 19 19 H 1.08994 * 109.48110 * 297.50323 * 11 9 7 20 20 H 1.09006 * 109.47643 * 57.53447 * 11 9 7 21 21 H 1.09000 * 109.48262 * 301.17570 * 13 12 11 22 22 H 1.09004 * 109.49024 * 181.14230 * 13 12 11 23 23 H 1.08999 * 109.52406 * 182.48743 * 14 13 12 24 24 H 1.09001 * 109.57014 * 62.32779 * 14 13 12 25 25 H 1.00907 * 110.99620 * 299.55947 * 17 15 14 26 26 H 1.00901 * 111.00021 * 63.50977 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7465 0.0006 5 1 3.1030 1.6963 1.2124 6 1 3.1028 1.6964 -1.2126 7 6 2.0045 -1.1941 -0.0059 8 1 1.5016 -2.1065 -0.2906 9 6 3.4595 -1.2261 0.3851 10 1 4.0155 -0.5117 -0.2220 11 6 3.5998 -0.8601 1.8650 12 8 4.9738 -0.9474 2.2478 13 6 5.5379 -2.2524 2.1037 14 6 5.4755 -2.6744 0.6333 15 6 4.0192 -2.6341 0.1601 16 1 3.9738 -2.8792 -0.9010 17 7 3.2267 -3.6059 0.9251 18 1 -0.4851 -0.8364 -0.0784 19 1 3.2422 0.1573 2.0233 20 1 3.0099 -1.5508 2.4677 21 1 4.9734 -2.9613 2.7095 22 1 6.5765 -2.2382 2.4340 23 1 5.8648 -3.6870 0.5281 24 1 6.0732 -1.9899 0.0314 25 1 3.5773 -4.5428 0.7924 26 1 3.2044 -3.3635 1.9043 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258544150.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:20 Heat of formation + Delta-G solvation = -53.517908 kcal Electronic energy + Delta-G solvation = -10570.413458 eV Core-core repulsion = 8648.674017 eV Total energy + Delta-G solvation = -1921.739441 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.97933 -34.51767 -32.84752 -30.30083 -29.04248 -24.59256 -23.85557 -21.59709 -18.39757 -17.41937 -16.14536 -15.27200 -14.65197 -14.40480 -13.82272 -13.46505 -13.22937 -12.11906 -11.62188 -11.50761 -11.22023 -10.87241 -10.42513 -10.18901 -9.82882 -9.50233 -8.99128 -8.52301 -8.19633 -7.81875 -6.35739 -3.94374 3.42269 3.47766 3.65027 4.54028 4.56158 5.19153 5.32799 5.36812 5.44263 5.53380 5.79714 6.09295 6.15512 6.24662 6.36689 6.49078 6.78455 7.05456 7.27929 7.77458 7.88744 8.09724 8.31241 8.53845 9.10857 9.72674 11.03715 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.056803 B = 0.019917 C = 0.016747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.814487 B = 1405.463007 C = 1671.564025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.023 3.977 3 Si 1.042 2.958 4 H -0.286 1.286 5 H -0.275 1.275 6 H -0.284 1.284 7 C -0.577 4.577 8 H 0.070 0.930 9 C -0.003 4.003 10 H 0.029 0.971 11 C 0.047 3.953 12 O -0.399 6.399 13 C 0.065 3.935 14 C -0.195 4.195 15 C 0.106 3.894 16 H 0.072 0.928 17 N -0.825 5.825 18 H 0.267 0.733 19 H 0.092 0.908 20 H 0.044 0.956 21 H 0.037 0.963 22 H 0.079 0.921 23 H 0.057 0.943 24 H 0.070 0.930 25 H 0.320 0.680 26 H 0.333 0.667 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.733 -3.891 2.790 10.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.182 4.182 3 Si 0.871 3.129 4 H -0.212 1.212 5 H -0.202 1.202 6 H -0.211 1.211 7 C -0.615 4.615 8 H 0.088 0.912 9 C -0.023 4.023 10 H 0.047 0.953 11 C -0.029 4.029 12 O -0.319 6.319 13 C -0.012 4.012 14 C -0.235 4.235 15 C -0.005 4.005 16 H 0.090 0.910 17 N -0.354 5.354 18 H 0.078 0.922 19 H 0.110 0.890 20 H 0.062 0.938 21 H 0.055 0.945 22 H 0.098 0.902 23 H 0.076 0.924 24 H 0.088 0.912 25 H 0.131 0.869 26 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 8.985 -1.842 2.468 9.498 hybrid contribution 0.985 -2.171 0.286 2.401 sum 9.970 -4.013 2.754 11.095 Atomic orbital electron populations 1.70837 1.06888 1.30890 1.45839 1.25774 0.96342 1.02245 0.93797 0.84081 0.75295 0.76243 0.77294 1.21222 1.20178 1.21067 1.21907 0.93763 0.96389 1.49450 0.91192 1.19615 0.98679 0.91498 0.92463 0.95309 1.23596 0.79110 1.02256 0.97914 1.87839 1.28179 1.28830 1.87038 1.22349 0.97926 0.85889 0.95053 1.23113 1.01291 1.00846 0.98236 1.21413 0.87105 0.94691 0.97334 0.90950 1.58773 1.58539 1.03757 1.14312 0.92229 0.89008 0.93760 0.94451 0.90233 0.92398 0.91154 0.86853 0.85320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.21 13.70 55.43 0.76 -27.46 15 2 C 0.02 0.66 5.34 -17.82 -0.10 0.56 15 3 Si 1.04 25.58 26.41 -169.99 -4.49 21.10 15 4 H -0.29 -7.08 7.11 56.52 0.40 -6.68 15 5 H -0.27 -6.34 5.58 56.52 0.32 -6.02 15 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 15 7 C -0.58 -16.22 8.45 -34.44 -0.29 -16.51 15 8 H 0.07 2.16 7.74 -52.49 -0.41 1.75 15 9 C 0.00 -0.07 1.71 -91.63 -0.16 -0.23 15 10 H 0.03 0.71 6.79 -51.93 -0.35 0.36 15 11 C 0.05 1.07 5.55 37.20 0.21 1.28 15 12 O -0.40 -8.28 10.77 -35.23 -0.38 -8.66 15 13 C 0.07 1.08 6.58 37.21 0.24 1.33 15 14 C -0.19 -3.22 5.81 -26.59 -0.15 -3.38 15 15 C 0.11 2.14 3.17 -67.53 -0.21 1.93 15 16 H 0.07 1.51 8.14 -51.93 -0.42 1.08 15 17 N -0.83 -15.67 8.50 -4.51 -0.04 -15.71 15 18 H 0.27 8.32 8.73 -40.82 -0.36 7.96 15 19 H 0.09 2.20 4.86 -51.93 -0.25 1.95 15 20 H 0.04 1.00 6.73 -51.93 -0.35 0.65 15 21 H 0.04 0.58 6.91 -51.93 -0.36 0.22 15 22 H 0.08 1.12 8.14 -51.93 -0.42 0.69 15 23 H 0.06 0.81 8.14 -51.93 -0.42 0.38 15 24 H 0.07 1.17 8.14 -51.93 -0.42 0.75 15 25 H 0.32 5.03 9.04 -39.29 -0.36 4.67 15 26 H 0.33 6.21 5.70 -39.29 -0.22 5.99 15 LS Contribution 204.83 15.07 3.09 3.09 Total: -1.00 -30.46 204.83 -4.75 -35.20 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -3.23 Total: 7.45 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: -0.46 Total: -15.02 kcal Atomic # 7 Polarization: -43.89 SS G_CDS: 0.72 Total: -43.16 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: -0.38 Total: -8.66 kcal Atomic # 14 Polarization: 25.58 SS G_CDS: -4.49 Total: 21.10 kcal Total LS contribution 3.09 Total: 3.09 kcal Total: -30.46 -4.75 -35.20 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258544150.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.313 kcal (2) G-P(sol) polarization free energy of solvation -30.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds