Wall clock time and date at job start Mon Mar 30 2020 02:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 119.99702 * 2 1 4 4 H 1.48497 * 109.47038 * 239.99445 * 3 2 1 5 5 H 1.48492 * 109.47219 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46896 * 120.00068 * 3 2 1 7 7 C 1.37872 * 119.99985 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99842 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00151 * 0.02562 * 7 2 1 10 10 H 1.08995 * 109.52271 * 59.87535 * 9 7 2 11 11 C 1.53087 * 109.52191 * 299.68601 * 9 7 2 12 12 O 1.42905 * 109.41504 * 182.48776 * 11 9 7 13 13 C 1.42905 * 114.09831 * 61.15479 * 12 11 9 14 14 C 1.53090 * 109.41466 * 298.84306 * 13 12 11 15 15 C 1.53181 * 109.16481 * 57.61337 * 14 13 12 16 16 H 1.08997 * 109.54268 * 62.87505 * 15 14 13 17 17 N 1.46895 * 109.54463 * 183.15101 * 15 14 13 18 18 H 0.97006 * 120.00065 * 0.02562 * 1 2 3 19 19 H 1.08994 * 109.48330 * 62.50312 * 11 9 7 20 20 H 1.09001 * 109.48123 * 302.46708 * 11 9 7 21 21 H 1.08998 * 109.47767 * 58.82768 * 13 12 11 22 22 H 1.09005 * 109.47547 * 178.85011 * 13 12 11 23 23 H 1.09007 * 109.51738 * 177.51413 * 14 13 12 24 24 H 1.08997 * 109.52670 * 297.63889 * 14 13 12 25 25 H 1.00898 * 110.99888 * 299.99787 * 17 15 14 26 26 H 1.00896 * 111.00043 * 63.94889 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6227 -2.5570 -0.8882 11 6 0.3759 -2.5846 1.2537 12 8 -0.2930 -3.8471 1.2808 13 6 0.5864 -4.9725 1.3299 14 6 1.4699 -4.9829 0.0798 15 6 2.2455 -3.6643 0.0011 16 1 2.9071 -3.5784 0.8631 17 7 3.0390 -3.6338 -1.2347 18 1 -0.4850 0.8401 -0.0004 19 1 -0.3620 -1.7826 1.2372 20 1 1.0011 -2.4854 2.1411 21 1 1.2143 -4.9045 2.2183 22 1 0.0000 -5.8905 1.3686 23 1 2.1715 -5.8153 0.1366 24 1 0.8454 -5.0927 -0.8068 25 1 3.6976 -4.3978 -1.2605 26 1 2.4420 -3.6435 -2.0480 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258544155.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:22 Heat of formation + Delta-G solvation = -58.505517 kcal Electronic energy + Delta-G solvation = -10424.019395 eV Core-core repulsion = 8502.063674 eV Total energy + Delta-G solvation = -1921.955720 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.44348 -34.51330 -32.88718 -29.79384 -28.96255 -24.91422 -22.62519 -21.89744 -19.18238 -16.47289 -15.22486 -15.08530 -14.78067 -14.35359 -13.68926 -13.07449 -12.73934 -12.32643 -11.84305 -11.00980 -10.91393 -10.58094 -10.41356 -10.30437 -10.08865 -9.22503 -8.96401 -8.56006 -8.28200 -7.74982 -5.96344 -3.98047 3.37256 3.41272 3.45106 4.48014 4.90494 5.28422 5.41331 5.52387 5.64297 5.83434 6.00361 6.22733 6.34844 6.58612 6.72281 6.81064 7.09821 7.62377 7.72807 7.92639 8.10113 8.20431 8.24775 8.58152 9.06879 9.64974 11.11731 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.060597 B = 0.016874 C = 0.014067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.954777 B = 1658.913942 C = 1989.979741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.053 3.947 3 Si 0.896 3.104 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.490 4.490 8 H 0.064 0.936 9 C 0.028 3.972 10 H 0.032 0.968 11 C 0.062 3.938 12 O -0.401 6.401 13 C 0.069 3.931 14 C -0.189 4.189 15 C 0.096 3.904 16 H 0.066 0.934 17 N -0.827 5.827 18 H 0.261 0.739 19 H 0.123 0.877 20 H 0.024 0.976 21 H 0.038 0.962 22 H 0.074 0.926 23 H 0.052 0.948 24 H 0.061 0.939 25 H 0.319 0.681 26 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.390 -6.889 0.829 7.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.147 4.147 3 Si 0.725 3.275 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.529 4.529 8 H 0.082 0.918 9 C 0.009 3.991 10 H 0.050 0.950 11 C -0.014 4.014 12 O -0.320 6.320 13 C -0.010 4.010 14 C -0.229 4.229 15 C -0.015 4.015 16 H 0.084 0.916 17 N -0.353 5.353 18 H 0.071 0.929 19 H 0.141 0.859 20 H 0.043 0.957 21 H 0.056 0.944 22 H 0.092 0.908 23 H 0.071 0.929 24 H 0.080 0.920 25 H 0.130 0.870 26 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.317 -6.037 1.077 6.556 hybrid contribution 0.347 -0.062 -0.237 0.425 sum 2.665 -6.099 0.840 6.709 Atomic orbital electron populations 1.69835 1.05864 1.26654 1.51649 1.25041 0.94902 0.99273 0.95434 0.86583 0.79439 0.82943 0.78572 1.20307 1.21503 1.20426 1.21037 0.93345 0.89436 1.49075 0.91766 1.19282 0.92382 0.92379 0.95095 0.94994 1.23147 0.98075 0.82955 0.97254 1.87871 1.34010 1.15238 1.94873 1.22266 0.92695 0.90214 0.95795 1.23136 0.99820 1.00109 0.99872 1.21664 0.94368 0.93338 0.92169 0.91572 1.58771 1.21670 1.50573 1.04323 0.92898 0.85914 0.95724 0.94391 0.90815 0.92903 0.92004 0.87048 0.85308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.99 11.37 55.43 0.63 -25.36 15 2 C 0.05 1.49 5.31 -17.82 -0.09 1.40 15 3 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 15 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 15 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15 7 C -0.49 -13.58 8.25 -34.44 -0.28 -13.86 15 8 H 0.06 1.80 7.75 -52.48 -0.41 1.40 15 9 C 0.03 0.70 1.93 -91.63 -0.18 0.52 15 10 H 0.03 0.90 8.14 -51.93 -0.42 0.47 15 11 C 0.06 1.54 5.87 37.20 0.22 1.76 15 12 O -0.40 -9.15 10.77 -35.23 -0.38 -9.52 15 13 C 0.07 1.25 6.84 37.20 0.25 1.51 15 14 C -0.19 -3.36 5.71 -26.59 -0.15 -3.52 15 15 C 0.10 2.01 2.70 -67.53 -0.18 1.82 15 16 H 0.07 1.42 8.14 -51.93 -0.42 1.00 15 17 N -0.83 -15.78 8.94 -4.51 -0.04 -15.82 15 18 H 0.26 7.23 8.31 -40.82 -0.34 6.89 15 19 H 0.12 3.38 6.17 -51.93 -0.32 3.06 15 20 H 0.02 0.60 8.14 -51.93 -0.42 0.18 15 21 H 0.04 0.66 8.14 -51.93 -0.42 0.23 15 22 H 0.07 1.15 8.14 -51.93 -0.42 0.73 15 23 H 0.05 0.79 8.14 -51.92 -0.42 0.37 15 24 H 0.06 1.12 8.14 -51.93 -0.42 0.70 15 25 H 0.32 5.02 9.04 -39.29 -0.36 4.66 15 26 H 0.33 6.23 8.98 -39.29 -0.35 5.88 15 LS Contribution 215.77 15.07 3.25 3.25 Total: -1.00 -29.18 215.77 -5.50 -34.69 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -3.53 Total: 6.44 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: -0.42 Total: -10.37 kcal Atomic # 7 Polarization: -41.78 SS G_CDS: 0.59 Total: -41.19 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: -0.38 Total: -9.52 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 3.25 Total: 3.25 kcal Total: -29.18 -5.50 -34.69 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258544155.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.819 kcal (2) G-P(sol) polarization free energy of solvation -29.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds