Wall clock time and date at job start Mon Mar 30 2020 02:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 119.99702 * 2 1 4 4 H 1.48497 * 109.47038 * 239.99445 * 3 2 1 5 5 H 1.48492 * 109.47219 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46896 * 120.00068 * 3 2 1 7 7 C 1.37872 * 119.99985 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99842 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00151 * 0.02562 * 7 2 1 10 10 H 1.08995 * 109.52271 * 59.87535 * 9 7 2 11 11 C 1.53087 * 109.52191 * 299.68601 * 9 7 2 12 12 O 1.42905 * 109.41504 * 182.48776 * 11 9 7 13 13 C 1.42905 * 114.09831 * 61.15479 * 12 11 9 14 14 C 1.53090 * 109.41466 * 298.84306 * 13 12 11 15 15 C 1.53181 * 109.16481 * 57.61337 * 14 13 12 16 16 H 1.08995 * 109.54695 * 183.15097 * 15 14 13 17 17 N 1.46897 * 109.54357 * 62.96744 * 15 14 13 18 18 H 0.97006 * 120.00065 * 0.02562 * 1 2 3 19 19 H 1.08994 * 109.48330 * 62.50312 * 11 9 7 20 20 H 1.09001 * 109.48123 * 302.46708 * 11 9 7 21 21 H 1.08998 * 109.47767 * 58.82768 * 13 12 11 22 22 H 1.09004 * 109.47562 * 178.86126 * 13 12 11 23 23 H 1.09007 * 109.51738 * 177.51413 * 14 13 12 24 24 H 1.08996 * 109.52412 * 297.70387 * 14 13 12 25 25 H 1.00902 * 110.99967 * 60.00415 * 17 15 14 26 26 H 1.00897 * 110.99980 * 183.95724 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6227 -2.5570 -0.8882 11 6 0.3759 -2.5846 1.2537 12 8 -0.2930 -3.8471 1.2808 13 6 0.5864 -4.9725 1.3299 14 6 1.4699 -4.9829 0.0798 15 6 2.2455 -3.6643 0.0011 16 1 2.8343 -3.6416 -0.9158 17 7 3.1388 -3.5496 1.1617 18 1 -0.4850 0.8401 -0.0004 19 1 -0.3620 -1.7826 1.2372 20 1 1.0011 -2.4854 2.1411 21 1 1.2143 -4.9045 2.2183 22 1 0.0000 -5.8906 1.3684 23 1 2.1715 -5.8153 0.1366 24 1 0.8453 -5.0915 -0.8068 25 1 3.7995 -4.3118 1.1862 26 1 3.6135 -2.6593 1.1660 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258544157.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:23 Heat of formation + Delta-G solvation = -57.909456 kcal Electronic energy + Delta-G solvation = -10511.012187 eV Core-core repulsion = 8589.082314 eV Total energy + Delta-G solvation = -1921.929873 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -38.34728 -34.29016 -32.83123 -29.75801 -28.76187 -25.00931 -23.10267 -21.78044 -18.37381 -16.45783 -15.33570 -14.80513 -14.73681 -14.28960 -13.91786 -13.37963 -12.19322 -11.87561 -11.77182 -11.25805 -10.95900 -10.75083 -10.50809 -10.15408 -9.95415 -9.07955 -8.87512 -8.61034 -8.31907 -7.58792 -6.04848 -4.10646 3.28902 3.34474 3.35760 4.38480 5.08546 5.28097 5.42863 5.67453 5.90164 5.96949 6.28065 6.46439 6.50195 6.65583 6.83679 7.05642 7.26617 7.58044 7.77965 7.91235 8.09277 8.21702 8.36021 8.60834 8.91391 9.53291 11.02219 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.069266 B = 0.016601 C = 0.014518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.141330 B = 1686.279347 C = 1928.238224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.062 3.938 3 Si 0.894 3.106 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.513 4.513 8 H 0.054 0.946 9 C 0.026 3.974 10 H 0.033 0.967 11 C 0.073 3.927 12 O -0.405 6.405 13 C 0.074 3.926 14 C -0.146 4.146 15 C 0.094 3.906 16 H 0.019 0.981 17 N -0.839 5.839 18 H 0.263 0.737 19 H 0.112 0.888 20 H 0.035 0.965 21 H 0.049 0.951 22 H 0.066 0.934 23 H 0.051 0.949 24 H 0.063 0.937 25 H 0.316 0.684 26 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.608 -5.607 1.121 6.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.140 4.140 3 Si 0.722 3.278 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.551 4.551 8 H 0.072 0.928 9 C 0.007 3.993 10 H 0.051 0.949 11 C -0.002 4.002 12 O -0.325 6.325 13 C -0.004 4.004 14 C -0.185 4.185 15 C -0.017 4.017 16 H 0.037 0.963 17 N -0.370 5.370 18 H 0.073 0.927 19 H 0.130 0.870 20 H 0.054 0.946 21 H 0.068 0.932 22 H 0.084 0.916 23 H 0.070 0.930 24 H 0.082 0.918 25 H 0.126 0.874 26 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 2.575 -5.537 1.544 6.299 hybrid contribution 1.634 1.027 -0.821 2.097 sum 4.209 -4.510 0.723 6.211 Atomic orbital electron populations 1.69845 1.05875 1.26843 1.50175 1.24997 0.94905 0.99190 0.94882 0.86623 0.79567 0.83083 0.78515 1.20419 1.21217 1.20198 1.20937 0.92517 0.90363 1.51324 0.92799 1.19269 0.92882 0.91519 0.95622 0.94885 1.22899 0.97253 0.82437 0.97644 1.87811 1.34222 1.15468 1.94986 1.22194 0.92249 0.89366 0.96550 1.22214 0.99004 0.97524 0.99737 1.21446 0.94377 0.95768 0.90109 0.96275 1.58749 1.25451 1.07256 1.45530 0.92661 0.87024 0.94643 0.93243 0.91617 0.93027 0.91847 0.87361 0.83610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.46 11.37 55.43 0.63 -24.83 15 2 C 0.06 1.70 5.31 -17.82 -0.09 1.61 15 3 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 15 4 H -0.28 -6.49 7.11 56.52 0.40 -6.08 15 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 15 6 H -0.28 -6.41 7.11 56.52 0.40 -6.00 15 7 C -0.51 -13.80 7.89 -34.44 -0.27 -14.07 15 8 H 0.05 1.40 6.65 -52.48 -0.35 1.05 15 9 C 0.03 0.66 2.13 -91.63 -0.20 0.47 15 10 H 0.03 0.94 8.14 -51.93 -0.42 0.52 15 11 C 0.07 1.88 5.71 37.20 0.21 2.09 15 12 O -0.41 -9.70 10.77 -35.23 -0.38 -10.08 15 13 C 0.07 1.44 6.68 37.20 0.25 1.69 15 14 C -0.15 -2.74 5.80 -26.59 -0.15 -2.90 15 15 C 0.09 1.99 3.12 -67.52 -0.21 1.78 15 16 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 15 17 N -0.84 -16.02 8.01 -4.51 -0.04 -16.05 15 18 H 0.26 7.20 8.31 -40.82 -0.34 6.86 15 19 H 0.11 3.16 6.17 -51.93 -0.32 2.84 15 20 H 0.04 0.92 7.75 -51.93 -0.40 0.51 15 21 H 0.05 0.96 7.75 -51.93 -0.40 0.56 15 22 H 0.07 1.10 8.14 -51.93 -0.42 0.68 15 23 H 0.05 0.82 8.14 -51.92 -0.42 0.40 15 24 H 0.06 1.19 8.14 -51.93 -0.42 0.77 15 25 H 0.32 5.02 9.04 -39.29 -0.36 4.67 15 26 H 0.35 6.91 7.17 -39.29 -0.28 6.63 15 LS Contribution 211.20 15.07 3.18 3.18 Total: -1.00 -28.61 211.20 -5.45 -34.06 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -3.36 Total: 7.06 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: -0.47 Total: -9.32 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: 0.59 Total: -40.89 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: -0.38 Total: -10.08 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 3.18 Total: 3.18 kcal Total: -28.61 -5.45 -34.06 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258544157.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.850 kcal (2) G-P(sol) polarization free energy of solvation -28.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds