Wall clock time and date at job start Mon Mar 30 2020 02:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 119.99702 * 2 1 4 4 H 1.48497 * 109.47038 * 239.99445 * 3 2 1 5 5 H 1.48492 * 109.47219 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46896 * 120.00068 * 3 2 1 7 7 C 1.37872 * 119.99985 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99842 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00151 * 0.02562 * 7 2 1 10 10 H 1.08995 * 109.52271 * 59.87535 * 9 7 2 11 11 C 1.53087 * 109.52191 * 299.68601 * 9 7 2 12 12 O 1.42905 * 109.41504 * 182.48776 * 11 9 7 13 13 C 1.42905 * 114.09831 * 61.15479 * 12 11 9 14 14 C 1.53090 * 109.41466 * 298.84306 * 13 12 11 15 15 C 1.53181 * 109.16481 * 57.61337 * 14 13 12 16 16 H 1.08995 * 109.54695 * 183.15097 * 15 14 13 17 17 N 1.46897 * 109.54357 * 62.96744 * 15 14 13 18 18 H 0.97006 * 120.00065 * 0.02562 * 1 2 3 19 19 H 1.08994 * 109.48330 * 62.50312 * 11 9 7 20 20 H 1.09001 * 109.48123 * 302.46708 * 11 9 7 21 21 H 1.08998 * 109.47767 * 58.82768 * 13 12 11 22 22 H 1.09004 * 109.47562 * 178.86126 * 13 12 11 23 23 H 1.09007 * 109.51738 * 177.51413 * 14 13 12 24 24 H 1.08996 * 109.52412 * 297.70387 * 14 13 12 25 25 H 1.00902 * 110.99967 * 60.00415 * 17 15 14 26 26 H 1.00897 * 110.99980 * 183.95724 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6227 -2.5570 -0.8882 11 6 0.3759 -2.5846 1.2537 12 8 -0.2930 -3.8471 1.2808 13 6 0.5864 -4.9725 1.3299 14 6 1.4699 -4.9829 0.0798 15 6 2.2455 -3.6643 0.0011 16 1 2.8343 -3.6416 -0.9158 17 7 3.1388 -3.5496 1.1617 18 1 -0.4850 0.8401 -0.0004 19 1 -0.3620 -1.7826 1.2372 20 1 1.0011 -2.4854 2.1411 21 1 1.2143 -4.9045 2.2183 22 1 0.0000 -5.8906 1.3684 23 1 2.1715 -5.8153 0.1366 24 1 0.8453 -5.0915 -0.8068 25 1 3.7995 -4.3118 1.1862 26 1 3.6135 -2.6593 1.1660 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258544157.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:23 Heat of formation + Delta-G solvation = -79.193754 kcal Electronic energy + Delta-G solvation = -10511.935143 eV Core-core repulsion = 8589.082314 eV Total energy + Delta-G solvation = -1922.852830 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 171.100 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.13430 -36.10213 -34.78289 -31.54231 -30.50503 -27.01624 -24.88845 -23.59902 -20.13539 -18.50147 -17.14730 -16.60075 -16.47395 -16.08388 -15.65291 -15.13833 -14.08499 -13.67214 -13.46325 -13.05532 -12.77973 -12.58389 -12.29763 -12.11001 -11.72412 -10.94914 -10.79090 -10.54841 -10.26018 -9.21948 -8.12612 -6.25918 1.43063 1.44437 1.52053 2.41900 3.12526 3.42221 3.86310 4.11428 4.31368 4.41706 4.69022 4.76634 4.86448 4.96196 5.15280 5.23518 5.35002 5.50735 5.75739 5.88354 6.19437 6.47121 6.66597 6.88002 6.90138 7.42220 8.93860 Molecular weight = 171.10amu Principal moments of inertia in cm(-1) A = 0.069266 B = 0.016601 C = 0.014518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.141330 B = 1686.279347 C = 1928.238224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.009 3.991 3 Si 0.961 3.039 4 H -0.272 1.272 5 H -0.288 1.288 6 H -0.267 1.267 7 C -0.525 4.525 8 H 0.063 0.937 9 C 0.022 3.978 10 H -0.007 1.007 11 C 0.090 3.910 12 O -0.424 6.424 13 C 0.066 3.934 14 C -0.141 4.141 15 C 0.098 3.902 16 H 0.018 0.982 17 N -0.837 5.837 18 H 0.262 0.738 19 H 0.078 0.922 20 H 0.030 0.970 21 H 0.054 0.946 22 H 0.100 0.900 23 H 0.091 0.909 24 H 0.058 0.942 25 H 0.339 0.661 26 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.034 -6.422 1.424 8.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.189 4.189 3 Si 0.787 3.213 4 H -0.197 1.197 5 H -0.213 1.213 6 H -0.192 1.192 7 C -0.563 4.563 8 H 0.081 0.919 9 C 0.003 3.997 10 H 0.011 0.989 11 C 0.013 3.987 12 O -0.344 6.344 13 C -0.010 4.010 14 C -0.179 4.179 15 C -0.014 4.014 16 H 0.036 0.964 17 N -0.369 5.369 18 H 0.072 0.928 19 H 0.096 0.904 20 H 0.048 0.952 21 H 0.072 0.928 22 H 0.118 0.882 23 H 0.109 0.891 24 H 0.077 0.923 25 H 0.152 0.848 26 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 4.023 -6.385 1.850 7.770 hybrid contribution 1.176 1.198 -0.910 1.910 sum 5.199 -5.187 0.940 7.404 Atomic orbital electron populations 1.70009 1.07460 1.27512 1.51165 1.25845 0.95664 1.02815 0.94600 0.85558 0.78231 0.78652 0.78875 1.19719 1.21321 1.19222 1.21302 0.93068 0.91170 1.50777 0.91940 1.19204 0.93437 0.93371 0.93675 0.98926 1.22473 0.95993 0.82815 0.97377 1.87763 1.35679 1.15881 1.95119 1.22522 0.92618 0.88785 0.97113 1.22182 0.99289 0.97355 0.99112 1.21277 0.93958 0.95245 0.90882 0.96422 1.58641 1.25993 1.08007 1.44278 0.92840 0.90445 0.95189 0.92794 0.88225 0.89059 0.92280 0.84789 0.84082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.10 11.37 21.45 0.24 -53.86 15 2 C 0.01 0.52 5.31 84.65 0.45 0.97 15 3 Si 0.96 43.09 29.54 68.60 2.03 45.12 15 4 H -0.27 -11.82 7.11 99.48 0.71 -11.11 15 5 H -0.29 -12.83 7.11 99.48 0.71 -12.12 15 6 H -0.27 -11.51 7.11 99.48 0.71 -10.80 15 7 C -0.53 -28.29 7.89 25.60 0.20 -28.09 15 8 H 0.06 3.18 6.65 -2.91 -0.02 3.16 15 9 C 0.02 1.14 2.13 -11.45 -0.02 1.12 15 10 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 15 11 C 0.09 4.67 5.71 72.01 0.41 5.08 15 12 O -0.42 -20.15 10.77 -148.98 -1.60 -21.75 15 13 C 0.07 2.41 6.68 72.01 0.48 2.89 15 14 C -0.14 -4.90 5.80 30.68 0.18 -4.72 15 15 C 0.10 3.99 3.12 45.04 0.14 4.13 15 16 H 0.02 0.73 8.14 -2.39 -0.02 0.71 15 17 N -0.84 -29.98 8.01 -168.18 -1.35 -31.33 15 18 H 0.26 14.68 8.31 -92.70 -0.77 13.91 15 19 H 0.08 4.55 6.17 -2.39 -0.01 4.53 15 20 H 0.03 1.56 7.75 -2.39 -0.02 1.54 15 21 H 0.05 1.93 7.75 -2.39 -0.02 1.92 15 22 H 0.10 2.98 8.14 -2.38 -0.02 2.96 15 23 H 0.09 2.48 8.14 -2.38 -0.02 2.46 15 24 H 0.06 2.10 8.14 -2.39 -0.02 2.08 15 25 H 0.34 9.59 9.04 -89.69 -0.81 8.78 15 26 H 0.34 13.01 7.17 -89.70 -0.64 12.36 15 Total: -1.00 -61.39 211.20 0.88 -60.50 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: -0.27 Total: 19.93 kcal Atomic # 6 Polarization: -20.45 SS G_CDS: 1.84 Total: -18.61 kcal Atomic # 7 Polarization: -84.08 SS G_CDS: -1.10 Total: -85.19 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: -1.60 Total: -21.75 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -61.39 0.88 -60.50 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258544157.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.689 kcal (2) G-P(sol) polarization free energy of solvation -61.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds