Wall clock time and date at job start Mon Mar 30 2020 01:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30648 * 1 3 3 Si 1.86795 * 119.99916 * 2 1 4 4 H 1.48502 * 109.47160 * 239.99903 * 3 2 1 5 5 H 1.48501 * 109.47470 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47048 * 120.00087 * 3 2 1 7 7 C 1.40114 * 119.99954 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99758 * 179.97438 * 7 2 1 9 9 C 1.46216 * 120.00181 * 359.97438 * 7 2 1 10 10 O 1.21609 * 119.99961 * 0.02562 * 9 7 2 11 11 O 1.34995 * 119.99942 * 180.02562 * 9 7 2 12 12 C 1.42903 * 116.99827 * 180.02562 * 11 9 7 13 13 C 1.53515 * 114.17048 * 149.99810 * 12 11 9 14 14 N 1.47481 * 87.93334 * 87.61937 * 13 12 11 15 15 C 1.47488 * 87.83530 * 27.00963 * 14 13 12 16 16 H 0.96996 * 120.00367 * 0.02562 * 1 2 3 17 17 H 1.08997 * 113.38078 * 16.92065 * 12 11 9 18 18 H 1.09004 * 113.47747 * 332.85841 * 13 12 11 19 19 H 1.08995 * 113.53124 * 202.39902 * 13 12 11 20 20 H 1.00901 * 110.99857 * 138.69928 * 14 13 12 21 21 H 1.08996 * 113.47304 * 87.75121 * 15 14 13 22 22 H 1.08997 * 113.47652 * 218.22256 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 3.0942 1.6964 -1.2125 5 1 1.2755 2.7465 0.0006 6 1 3.0942 1.6964 1.2125 7 6 2.0070 -1.2134 -0.0005 8 1 3.0871 -1.2134 -0.0010 9 6 1.2760 -2.4797 -0.0005 10 8 0.0599 -2.4797 -0.0005 11 8 1.9510 -3.6488 -0.0005 12 6 1.1727 -4.8473 -0.0011 13 6 1.8479 -6.0349 -0.7014 14 7 2.4901 -6.3600 0.5857 15 6 1.3478 -5.7110 1.2559 16 1 -0.4850 0.8400 -0.0004 17 1 0.1345 -4.6887 -0.2927 18 1 2.5545 -5.7375 -1.4763 19 1 1.1458 -6.7963 -1.0410 20 1 2.4875 -7.3556 0.7498 21 1 0.5115 -6.3855 1.4391 22 1 1.6306 -5.1392 2.1397 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258550947.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:00 Heat of formation + Delta-G solvation = -56.489075 kcal Electronic energy + Delta-G solvation = -9790.882912 eV Core-core repulsion = 7733.181537 eV Total energy + Delta-G solvation = -2057.701375 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 171.068 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.45152 -37.17534 -34.07628 -32.56988 -27.28931 -25.98994 -25.47250 -21.29335 -18.79576 -17.60108 -16.28388 -15.85893 -15.02545 -14.24958 -14.01140 -13.34526 -13.05753 -12.07476 -11.88142 -11.29491 -11.14783 -10.73296 -10.55765 -10.32724 -10.12207 -9.13566 -8.83636 -8.68124 -8.10586 -6.45296 -4.90000 3.09912 3.13534 3.16825 3.92077 4.25653 4.30508 4.84449 5.02538 5.38484 5.49716 5.57892 5.92560 6.09700 6.22573 6.28476 6.41749 7.27365 7.51739 7.82482 8.17878 8.76896 8.79223 10.29503 10.51408 Molecular weight = 171.07amu Principal moments of inertia in cm(-1) A = 0.105393 B = 0.011842 C = 0.011202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 265.607620 B = 2363.925367 C = 2499.021268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.761 5.761 2 C 0.080 3.920 3 Si 0.926 3.074 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.505 4.505 8 H 0.082 0.918 9 C 0.477 3.523 10 O -0.563 6.563 11 O -0.350 6.350 12 C 0.069 3.931 13 C -0.004 4.004 14 N -0.616 5.616 15 C -0.017 4.017 16 H 0.275 0.725 17 H 0.090 0.910 18 H 0.089 0.911 19 H 0.069 0.931 20 H 0.308 0.692 21 H 0.067 0.933 22 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.243 -5.787 0.005 6.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.140 4.140 3 Si 0.750 3.250 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.538 4.538 8 H 0.100 0.900 9 C 0.336 3.664 10 O -0.458 6.458 11 O -0.270 6.270 12 C 0.011 3.989 13 C -0.134 4.134 14 N -0.240 5.240 15 C -0.147 4.147 16 H 0.086 0.914 17 H 0.108 0.892 18 H 0.108 0.892 19 H 0.088 0.912 20 H 0.120 0.880 21 H 0.085 0.915 22 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.415 -5.219 0.106 5.752 hybrid contribution -0.599 -0.040 -0.057 0.603 sum 1.816 -5.258 0.049 5.563 Atomic orbital electron populations 1.70003 1.07276 1.28298 1.33381 1.25853 0.94896 1.00791 0.92478 0.86116 0.79582 0.79423 0.79921 1.18838 1.20280 1.18840 1.20397 0.94302 0.86326 1.52778 0.89984 1.21337 0.86734 0.82248 0.76040 1.90640 1.14924 1.86033 1.54182 1.86367 1.40395 1.13550 1.86639 1.22688 0.96600 0.84921 0.94722 1.23912 0.97931 0.96551 0.95054 1.67408 1.36764 1.14995 1.04830 1.24100 0.92826 0.97518 1.00283 0.91434 0.89192 0.89243 0.91247 0.88047 0.91491 0.89389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -22.38 11.83 55.55 0.66 -21.72 14 2 C 0.08 2.23 5.50 -17.35 -0.10 2.13 14 3 Si 0.93 19.94 29.56 -169.99 -5.02 14.91 14 4 H -0.26 -5.51 7.11 56.52 0.40 -5.11 14 5 H -0.28 -5.74 7.11 56.52 0.40 -5.34 14 6 H -0.26 -5.53 7.11 56.52 0.40 -5.12 14 7 C -0.51 -14.81 9.67 -35.68 -0.34 -15.15 14 8 H 0.08 2.25 7.85 -52.48 -0.41 1.84 14 9 C 0.48 14.38 7.88 33.93 0.27 14.65 14 10 O -0.56 -18.22 14.21 -19.34 -0.27 -18.50 14 11 O -0.35 -9.29 10.18 -41.31 -0.42 -9.71 14 12 C 0.07 1.49 4.54 -26.20 -0.12 1.37 14 13 C 0.00 -0.07 8.46 -7.54 -0.06 -0.13 14 14 N -0.62 -10.36 8.71 -122.65 -1.07 -11.43 14 15 C -0.02 -0.30 8.46 -7.53 -0.06 -0.36 14 16 H 0.27 7.24 8.29 -40.82 -0.34 6.90 14 17 H 0.09 2.03 7.02 -51.93 -0.36 1.67 14 18 H 0.09 1.54 8.14 -51.93 -0.42 1.12 14 19 H 0.07 0.93 8.14 -51.93 -0.42 0.51 14 20 H 0.31 4.07 8.91 -39.29 -0.35 3.72 14 21 H 0.07 0.98 8.14 -51.93 -0.42 0.56 14 22 H 0.09 1.69 8.14 -51.93 -0.42 1.26 14 LS Contribution 204.96 15.07 3.09 3.09 Total: -1.00 -33.45 204.96 -5.41 -38.87 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -1.95 Total: 1.99 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: -0.42 Total: 2.50 kcal Atomic # 7 Polarization: -32.74 SS G_CDS: -0.41 Total: -33.15 kcal Atomic # 8 Polarization: -27.52 SS G_CDS: -0.70 Total: -28.21 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 3.09 Total: 3.09 kcal Total: -33.45 -5.41 -38.87 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258550947.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.623 kcal (2) G-P(sol) polarization free energy of solvation -33.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds