Wall clock time and date at job start Mon Mar 30 2020 01:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99433 * 2 1 4 4 H 1.48505 * 109.47033 * 239.99576 * 3 2 1 5 5 H 1.48501 * 109.47309 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47171 * 119.99791 * 3 2 1 7 7 C 1.37870 * 120.00459 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99752 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99933 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.50527 * 299.91888 * 9 7 2 11 11 C 1.53042 * 109.50469 * 60.00145 * 9 7 2 12 12 N 1.46843 * 109.52278 * 179.15850 * 11 9 7 13 13 C 1.46847 * 111.20124 * 298.25596 * 12 11 9 14 14 C 1.53034 * 109.51345 * 61.74903 * 13 12 11 15 15 C 1.53123 * 109.27992 * 300.80438 * 14 13 12 16 16 H 1.09002 * 109.58642 * 297.73897 * 15 14 13 17 17 N 1.46900 * 109.52589 * 177.57265 * 15 14 13 18 18 H 0.96994 * 120.00418 * 0.02562 * 1 2 3 19 19 H 1.08993 * 109.46299 * 59.14187 * 11 9 7 20 20 H 1.09004 * 109.45702 * 299.17289 * 11 9 7 21 21 H 1.00902 * 110.99874 * 174.15812 * 12 11 9 22 22 H 1.09002 * 109.46481 * 181.76055 * 13 12 11 23 23 H 1.08994 * 109.46283 * 301.73908 * 13 12 11 24 24 H 1.08997 * 109.50952 * 60.75924 * 14 13 12 25 25 H 1.08998 * 109.50459 * 180.87821 * 14 13 12 26 26 H 1.00898 * 110.99583 * 60.32441 * 17 15 14 27 27 H 1.00898 * 110.99995 * 184.28437 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2839 2.7465 -0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0847 -1.1938 0.0010 9 6 1.2512 -2.4990 0.0005 10 1 0.6251 -2.5578 0.8908 11 6 0.3716 -2.5813 -1.2491 12 7 -0.3474 -3.8616 -1.2597 13 6 0.5857 -4.9943 -1.3112 14 6 1.4715 -4.9840 -0.0634 15 6 2.2451 -3.6640 -0.0033 16 1 2.8977 -3.5830 -0.8726 17 7 3.0533 -3.6238 1.2227 18 1 -0.4850 0.8400 -0.0004 19 1 0.9970 -2.5086 -2.1389 20 1 -0.3466 -1.7614 -1.2422 21 1 -1.0056 -3.9003 -2.0235 22 1 0.0229 -5.9270 -1.3495 23 1 1.2102 -4.9102 -2.2006 24 1 0.8488 -5.0818 0.8259 25 1 2.1745 -5.8158 -0.1092 26 1 3.7170 -4.3835 1.2432 27 1 3.5188 -2.7340 1.3200 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258649778.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:02 Heat of formation + Delta-G solvation = -32.964125 kcal Electronic energy + Delta-G solvation = -10302.039523 eV Core-core repulsion = 8478.910023 eV Total energy + Delta-G solvation = -1823.129500 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.55540 -35.17140 -34.69451 -31.31467 -29.91088 -26.77136 -23.37765 -23.10767 -20.27298 -18.55126 -17.22754 -16.49781 -16.00895 -15.66336 -15.27052 -14.68265 -14.27920 -13.66069 -13.38571 -12.87855 -12.58758 -12.30913 -12.17046 -12.08539 -11.81959 -10.91723 -10.76395 -10.44629 -9.38040 -9.17737 -8.07517 -6.22116 1.42236 1.43564 1.50979 2.43391 3.16197 3.60438 3.81950 4.16921 4.29475 4.46793 4.69649 4.79227 4.82798 4.95543 5.12664 5.26762 5.34813 5.57583 5.85798 5.93919 6.22353 6.44974 6.54101 6.73729 6.88536 6.90778 7.45754 8.97022 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.059971 B = 0.016961 C = 0.014039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.777325 B = 1650.481322 C = 1993.915686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.013 3.987 3 Si 0.956 3.044 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.530 4.530 8 H 0.054 0.946 9 C 0.061 3.939 10 H -0.005 1.005 11 C 0.076 3.924 12 N -0.701 5.701 13 C 0.062 3.938 14 C -0.103 4.103 15 C 0.099 3.901 16 H 0.009 0.991 17 N -0.844 5.844 18 H 0.261 0.739 19 H -0.007 1.007 20 H 0.073 0.927 21 H 0.339 0.661 22 H 0.094 0.906 23 H 0.024 0.976 24 H 0.055 0.945 25 H 0.079 0.921 26 H 0.338 0.662 27 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.462 -6.586 -2.797 7.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.186 4.186 3 Si 0.782 3.218 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.569 4.569 8 H 0.072 0.928 9 C 0.042 3.958 10 H 0.014 0.986 11 C -0.054 4.054 12 N -0.332 5.332 13 C -0.068 4.068 14 C -0.142 4.142 15 C -0.012 4.012 16 H 0.027 0.973 17 N -0.375 5.375 18 H 0.070 0.930 19 H 0.011 0.989 20 H 0.092 0.908 21 H 0.157 0.843 22 H 0.112 0.888 23 H 0.042 0.958 24 H 0.074 0.926 25 H 0.098 0.902 26 H 0.150 0.850 27 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.561 -6.590 -1.728 7.278 hybrid contribution 1.336 1.321 -1.524 2.419 sum 3.896 -5.269 -3.252 7.316 Atomic orbital electron populations 1.70019 1.07221 1.27186 1.51060 1.25769 0.95666 1.02445 0.94754 0.85650 0.78355 0.79097 0.78737 1.19762 1.21111 1.19586 1.21401 0.92810 0.91892 1.50761 0.92793 1.18578 0.92302 0.91917 0.92998 0.98645 1.21901 0.96748 0.90332 0.96414 1.60365 1.19363 1.02902 1.50605 1.21931 0.94264 0.94413 0.96193 1.21576 0.98054 0.96334 0.98206 1.21371 0.94258 0.96131 0.89436 0.97331 1.58655 1.30562 1.08453 1.39836 0.93017 0.98885 0.90837 0.84327 0.88808 0.95819 0.92598 0.90211 0.84981 0.84367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.77 11.33 21.45 0.24 -53.52 15 2 C 0.01 0.70 5.30 84.65 0.45 1.15 15 3 Si 0.96 43.70 29.54 68.60 2.03 45.72 15 4 H -0.27 -12.05 7.11 99.48 0.71 -11.35 15 5 H -0.29 -12.88 7.11 99.48 0.71 -12.18 15 6 H -0.27 -12.03 7.11 99.48 0.71 -11.32 15 7 C -0.53 -29.28 7.88 25.60 0.20 -29.08 15 8 H 0.05 2.87 7.00 -2.91 -0.02 2.85 15 9 C 0.06 3.20 1.96 -11.48 -0.02 3.18 15 10 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 15 11 C 0.08 3.75 5.60 86.33 0.48 4.23 15 12 N -0.70 -28.45 6.84 -514.02 -3.52 -31.97 15 13 C 0.06 2.08 6.55 86.32 0.57 2.65 15 14 C -0.10 -3.72 5.67 30.65 0.17 -3.54 15 15 C 0.10 4.24 2.76 45.00 0.12 4.36 15 16 H 0.01 0.38 8.14 -2.39 -0.02 0.36 15 17 N -0.84 -32.85 9.24 -168.33 -1.56 -34.40 15 18 H 0.26 14.60 8.31 -92.71 -0.77 13.83 15 19 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 15 20 H 0.07 4.10 6.10 -2.38 -0.01 4.09 15 21 H 0.34 11.89 8.90 -89.69 -0.80 11.09 15 22 H 0.09 2.56 8.14 -2.39 -0.02 2.54 15 23 H 0.02 0.78 8.14 -2.39 -0.02 0.76 15 24 H 0.06 2.20 8.14 -2.39 -0.02 2.18 15 25 H 0.08 2.32 8.14 -2.39 -0.02 2.30 15 26 H 0.34 10.52 9.04 -89.70 -0.81 9.71 15 27 H 0.34 13.91 7.53 -89.70 -0.68 13.23 15 Total: -1.00 -61.88 217.87 -1.93 -63.82 By element: Atomic # 1 Polarization: 28.51 SS G_CDS: -1.10 Total: 27.41 kcal Atomic # 6 Polarization: -19.03 SS G_CDS: 1.97 Total: -17.06 kcal Atomic # 7 Polarization: -115.06 SS G_CDS: -4.83 Total: -119.89 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Total: -61.88 -1.93 -63.82 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258649778.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.854 kcal (2) G-P(sol) polarization free energy of solvation -61.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds