Wall clock time and date at job start Mon Mar 30 2020 01:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86796 * 120.00494 * 2 1 4 4 H 1.48502 * 109.47138 * 240.00106 * 3 2 1 5 5 H 1.48502 * 109.46872 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47447 * 119.99399 * 3 2 1 7 7 C 1.37884 * 119.99736 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99938 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00092 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.50818 * 299.93116 * 9 7 2 11 11 C 1.53044 * 109.49809 * 60.00226 * 9 7 2 12 12 N 1.46847 * 109.51335 * 179.12258 * 11 9 7 13 13 C 1.46847 * 111.20163 * 298.24410 * 12 11 9 14 14 C 1.53041 * 109.51486 * 61.75514 * 13 12 11 15 15 C 1.53119 * 109.50504 * 179.80021 * 9 7 2 16 16 H 1.09003 * 109.51872 * 62.50378 * 15 9 7 17 17 N 1.46893 * 109.52441 * 302.31932 * 15 9 7 18 18 H 0.96997 * 120.00216 * 0.02562 * 1 2 3 19 19 H 1.09002 * 109.46396 * 299.13568 * 11 9 7 20 20 H 1.08994 * 109.46485 * 59.11494 * 11 9 7 21 21 H 1.00902 * 110.99979 * 62.35429 * 12 11 9 22 22 H 1.09005 * 109.46836 * 301.74653 * 13 12 11 23 23 H 1.08995 * 109.45748 * 181.76188 * 13 12 11 24 24 H 1.08996 * 109.50341 * 180.87808 * 14 13 12 25 25 H 1.09004 * 109.53393 * 60.77542 * 14 13 12 26 26 H 1.00900 * 110.99815 * 179.97438 * 17 15 9 27 27 H 1.00902 * 110.99794 * 303.94939 * 17 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0017 10 1 0.6253 -2.5575 0.8924 11 6 0.3704 -2.5818 -1.2473 12 7 -0.3481 -3.8624 -1.2572 13 6 0.5854 -4.9947 -1.3096 14 6 1.4724 -4.9842 -0.0625 15 6 2.2452 -3.6637 -0.0029 16 1 2.8455 -3.6336 0.9064 17 7 3.1229 -3.5551 -1.1758 18 1 -0.4850 0.8400 -0.0004 19 1 -0.3482 -1.7622 -1.2399 20 1 0.9950 -2.5090 -2.1375 21 1 -0.9638 -3.9377 -0.4613 22 1 1.2092 -4.9104 -2.1995 23 1 0.0229 -5.9276 -1.3473 24 1 2.1757 -5.8156 -0.1090 25 1 0.8509 -5.0826 0.8276 26 1 3.7886 -4.3129 -1.2006 27 1 2.5843 -3.5185 -2.0283 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258649785.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:03 Heat of formation + Delta-G solvation = -29.656588 kcal Electronic energy + Delta-G solvation = -10415.297661 eV Core-core repulsion = 8592.311586 eV Total energy + Delta-G solvation = -1822.986075 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.05619 -34.95040 -34.28992 -31.32970 -29.69868 -26.60245 -24.06634 -23.11185 -20.18149 -18.30079 -17.32496 -16.36637 -16.23251 -15.41948 -15.05664 -14.67768 -14.32736 -13.72102 -13.32602 -12.82259 -12.55203 -12.23881 -12.15010 -11.98849 -11.91584 -11.22391 -10.96454 -10.40917 -9.31677 -9.00698 -8.03547 -6.10837 1.43398 1.44804 1.52460 2.48103 3.23009 3.65510 3.91685 4.13112 4.22917 4.26710 4.67722 4.73163 4.86317 4.91476 5.07616 5.21484 5.42130 5.53336 5.85026 6.02834 6.19337 6.46775 6.61376 6.64971 6.87037 6.99354 7.54134 9.01293 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.069514 B = 0.016562 C = 0.014537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 402.701562 B = 1690.161345 C = 1925.612719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.006 3.994 3 Si 0.952 3.048 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.501 4.501 8 H 0.053 0.947 9 C 0.022 3.978 10 H -0.008 1.008 11 C 0.075 3.925 12 N -0.696 5.696 13 C 0.059 3.941 14 C -0.182 4.182 15 C 0.102 3.898 16 H 0.050 0.950 17 N -0.834 5.834 18 H 0.258 0.742 19 H 0.069 0.931 20 H 0.042 0.958 21 H 0.333 0.667 22 H 0.066 0.934 23 H 0.087 0.913 24 H 0.078 0.922 25 H 0.056 0.944 26 H 0.337 0.663 27 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.231 -8.065 -1.628 8.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.191 4.191 3 Si 0.779 3.221 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.540 4.540 8 H 0.071 0.929 9 C 0.002 3.998 10 H 0.010 0.990 11 C -0.055 4.055 12 N -0.323 5.323 13 C -0.071 4.071 14 C -0.223 4.223 15 C -0.010 4.010 16 H 0.068 0.932 17 N -0.365 5.365 18 H 0.067 0.933 19 H 0.087 0.913 20 H 0.060 0.940 21 H 0.149 0.851 22 H 0.084 0.916 23 H 0.106 0.894 24 H 0.097 0.903 25 H 0.075 0.925 26 H 0.150 0.850 27 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.215 -7.233 -2.018 7.829 hybrid contribution 0.249 0.221 0.852 0.915 sum 2.464 -7.011 -1.166 7.522 Atomic orbital electron populations 1.69973 1.06909 1.26894 1.52609 1.25713 0.95656 1.02166 0.95578 0.85703 0.78309 0.79607 0.78489 1.20048 1.21219 1.20180 1.21336 0.93084 0.91210 1.48365 0.92887 1.19265 0.93297 0.93169 0.94098 0.98962 1.21871 0.96670 0.90094 0.96856 1.60847 1.21117 1.02818 1.47546 1.22032 0.94131 0.94410 0.96536 1.23006 1.00634 0.98816 0.99845 1.21346 0.93155 0.93451 0.93066 0.93162 1.58680 1.21003 1.51937 1.04877 0.93296 0.91261 0.93973 0.85055 0.91607 0.89435 0.90318 0.92514 0.84989 0.84922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.80 11.33 21.45 0.24 -53.56 15 2 C 0.01 0.35 5.30 84.66 0.45 0.79 15 3 Si 0.95 45.08 29.54 68.60 2.03 47.10 15 4 H -0.28 -12.81 7.11 99.48 0.71 -12.10 15 5 H -0.29 -13.30 7.11 99.48 0.71 -12.59 15 6 H -0.28 -12.82 7.11 99.48 0.71 -12.12 15 7 C -0.50 -27.92 8.16 25.60 0.21 -27.71 15 8 H 0.05 3.01 7.60 -2.91 -0.02 2.99 15 9 C 0.02 1.09 2.08 -11.49 -0.02 1.06 15 10 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 15 11 C 0.07 3.52 5.37 86.33 0.46 3.99 15 12 N -0.70 -26.83 6.87 -513.99 -3.53 -30.36 15 13 C 0.06 1.83 6.32 86.33 0.55 2.38 15 14 C -0.18 -5.75 5.75 30.65 0.18 -5.58 15 15 C 0.10 4.07 3.14 45.00 0.14 4.21 15 16 H 0.05 2.12 8.14 -2.39 -0.02 2.10 15 17 N -0.83 -30.62 8.58 -168.36 -1.44 -32.06 15 18 H 0.26 14.48 8.31 -92.71 -0.77 13.71 15 19 H 0.07 3.80 6.10 -2.39 -0.01 3.78 15 20 H 0.04 2.02 6.64 -2.39 -0.02 2.00 15 21 H 0.33 12.68 8.86 -89.69 -0.79 11.88 15 22 H 0.07 2.00 6.83 -2.38 -0.02 1.98 15 23 H 0.09 2.27 8.14 -2.39 -0.02 2.25 15 24 H 0.08 2.06 8.14 -2.39 -0.02 2.04 15 25 H 0.06 1.83 8.14 -2.38 -0.02 1.81 15 26 H 0.34 9.99 9.04 -89.69 -0.81 9.18 15 27 H 0.34 12.34 5.60 -89.69 -0.50 11.84 15 Total: -1.00 -59.76 213.44 -1.67 -61.43 By element: Atomic # 1 Polarization: 29.23 SS G_CDS: -0.92 Total: 28.31 kcal Atomic # 6 Polarization: -22.82 SS G_CDS: 1.96 Total: -20.86 kcal Atomic # 7 Polarization: -111.25 SS G_CDS: -4.73 Total: -115.98 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Total: -59.76 -1.67 -61.43 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258649785.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.770 kcal (2) G-P(sol) polarization free energy of solvation -59.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds