Wall clock time and date at job start Mon Mar 30 2020 01:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 119.99739 * 2 1 4 4 H 1.48500 * 109.46865 * 239.99881 * 3 2 1 5 5 H 1.48497 * 109.47422 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46948 * 120.00200 * 3 2 1 7 7 C 1.37875 * 120.00004 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00268 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00062 * 359.97438 * 7 2 1 10 10 H 1.09010 * 109.50345 * 59.92313 * 9 7 2 11 11 C 1.53035 * 109.50388 * 299.80528 * 9 7 2 12 12 N 1.46848 * 109.52142 * 180.87796 * 11 9 7 13 13 C 1.46847 * 111.19788 * 61.74047 * 12 11 9 14 14 C 1.53034 * 109.52486 * 298.25416 * 13 12 11 15 15 C 1.53114 * 109.50338 * 179.97438 * 9 7 2 16 16 H 1.09001 * 109.52084 * 57.69297 * 15 9 7 17 17 N 1.46897 * 109.52745 * 297.50142 * 15 9 7 18 18 H 0.97004 * 120.00478 * 0.02562 * 1 2 3 19 19 H 1.09000 * 109.45907 * 300.89146 * 11 9 7 20 20 H 1.08999 * 109.46252 * 60.87722 * 11 9 7 21 21 H 1.00897 * 111.00120 * 297.64369 * 12 11 9 22 22 H 1.08999 * 109.46634 * 178.23927 * 13 12 11 23 23 H 1.09006 * 109.46422 * 58.27823 * 13 12 11 24 24 H 1.08997 * 109.50792 * 299.24185 * 14 13 12 25 25 H 1.09006 * 109.50471 * 179.11839 * 14 13 12 26 26 H 1.00898 * 111.00301 * 180.31432 * 17 15 9 27 27 H 1.00906 * 110.99765 * 304.27389 * 17 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 1 0.6227 -2.5574 -0.8872 11 6 0.3751 -2.5823 1.2538 12 7 -0.3433 -3.8630 1.2659 13 6 0.5905 -4.9952 1.3142 14 6 1.4728 -4.9841 0.0638 15 6 2.2454 -3.6635 0.0015 16 1 2.9001 -3.5835 0.8692 17 7 3.0494 -3.6222 -1.2272 18 1 -0.4851 0.8400 -0.0004 19 1 1.0031 -2.5097 2.1418 20 1 -0.3437 -1.7629 1.2492 21 1 -0.9620 -3.9381 0.4724 22 1 0.0284 -5.9283 1.3537 23 1 1.2175 -4.9114 2.2019 24 1 0.8477 -5.0818 -0.8237 25 1 2.1764 -5.8156 0.1075 26 1 3.7101 -4.3844 -1.2528 27 1 2.4594 -3.6273 -2.0458 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258649792.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:05 Heat of formation + Delta-G solvation = -11.146474 kcal Electronic energy + Delta-G solvation = -10317.217851 eV Core-core repulsion = 8495.034435 eV Total energy + Delta-G solvation = -1822.183416 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.11785 -33.27905 -32.82970 -29.50765 -27.92574 -24.58837 -21.70062 -21.42760 -19.29032 -16.33363 -15.28760 -14.71674 -14.39709 -13.75354 -13.49423 -12.79808 -12.58482 -12.05773 -11.47372 -10.94753 -10.85969 -10.57047 -10.39019 -10.31344 -9.95343 -9.18443 -9.11448 -8.29831 -7.87128 -7.34969 -5.91881 -3.92626 3.39081 3.42819 3.46893 4.51791 5.19772 5.32329 5.46057 5.51941 5.67576 5.91070 6.17261 6.23445 6.35158 6.60186 6.82876 6.85061 7.17522 7.58805 7.79134 7.88490 8.08259 8.10783 8.22749 8.34145 8.59334 9.10892 9.69447 11.15388 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.060560 B = 0.016890 C = 0.014096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.241814 B = 1657.419335 C = 1985.880537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.054 3.946 3 Si 0.894 3.106 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.487 4.487 8 H 0.061 0.939 9 C 0.027 3.973 10 H 0.021 0.979 11 C 0.058 3.942 12 N -0.696 5.696 13 C 0.064 3.936 14 C -0.191 4.191 15 C 0.098 3.902 16 H 0.065 0.935 17 N -0.829 5.829 18 H 0.259 0.741 19 H 0.046 0.954 20 H 0.107 0.893 21 H 0.330 0.670 22 H 0.056 0.944 23 H 0.063 0.937 24 H 0.051 0.949 25 H 0.047 0.953 26 H 0.318 0.682 27 H 0.332 0.668 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.484 -7.029 0.064 7.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.146 4.146 3 Si 0.722 3.278 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.526 4.526 8 H 0.079 0.921 9 C 0.007 3.993 10 H 0.039 0.961 11 C -0.071 4.071 12 N -0.324 5.324 13 C -0.067 4.067 14 C -0.232 4.232 15 C -0.014 4.014 16 H 0.083 0.917 17 N -0.354 5.354 18 H 0.069 0.931 19 H 0.064 0.936 20 H 0.125 0.875 21 H 0.146 0.854 22 H 0.074 0.926 23 H 0.082 0.918 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.128 0.872 27 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 1.496 -6.156 1.034 6.419 hybrid contribution 0.441 -0.087 -1.219 1.299 sum 1.937 -6.243 -0.185 6.539 Atomic orbital electron populations 1.69839 1.05811 1.26424 1.51939 1.24994 0.94867 0.99091 0.95608 0.86628 0.79467 0.83170 0.78504 1.20445 1.21572 1.20472 1.21040 0.93254 0.89621 1.48678 0.92058 1.19332 0.92698 0.92289 0.95006 0.96082 1.22319 0.97907 0.89312 0.97555 1.60891 1.20601 1.03407 1.47479 1.21855 0.94079 0.94342 0.96468 1.23223 1.00236 1.00000 0.99758 1.21666 0.94391 0.93308 0.92014 0.91664 1.58795 1.21523 1.50674 1.04441 0.93104 0.93556 0.87512 0.85405 0.92580 0.91825 0.93027 0.93474 0.87165 0.85550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.77 11.34 55.43 0.63 -25.15 15 2 C 0.05 1.51 5.30 -17.82 -0.09 1.42 15 3 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 15 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 15 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 15 6 H -0.28 -6.77 7.11 56.52 0.40 -6.36 15 7 C -0.49 -13.46 8.23 -34.44 -0.28 -13.75 15 8 H 0.06 1.74 7.74 -52.49 -0.41 1.33 15 9 C 0.03 0.66 1.88 -91.70 -0.17 0.49 15 10 H 0.02 0.57 8.14 -51.92 -0.42 0.15 15 11 C 0.06 1.38 5.60 -3.83 -0.02 1.36 15 12 N -0.70 -14.03 6.87 -113.82 -0.78 -14.81 15 13 C 0.06 1.11 6.55 -3.84 -0.03 1.09 15 14 C -0.19 -3.30 5.65 -26.65 -0.15 -3.45 15 15 C 0.10 2.02 2.68 -67.59 -0.18 1.84 15 16 H 0.07 1.43 8.14 -51.93 -0.42 1.00 15 17 N -0.83 -15.89 8.91 -4.56 -0.04 -15.94 15 18 H 0.26 7.17 8.31 -40.82 -0.34 6.83 15 19 H 0.05 1.13 8.14 -51.93 -0.42 0.71 15 20 H 0.11 2.86 6.11 -51.93 -0.32 2.54 15 21 H 0.33 6.46 8.86 -39.29 -0.35 6.11 15 22 H 0.06 0.85 8.14 -51.93 -0.42 0.43 15 23 H 0.06 1.11 8.14 -51.93 -0.42 0.69 15 24 H 0.05 0.89 8.14 -51.93 -0.42 0.47 15 25 H 0.05 0.72 8.14 -51.93 -0.42 0.30 15 26 H 0.32 5.10 9.04 -39.29 -0.36 4.75 15 27 H 0.33 6.21 8.98 -39.29 -0.35 5.86 15 LS Contribution 219.91 15.07 3.31 3.31 Total: -1.00 -28.28 219.91 -6.70 -34.99 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -3.87 Total: 11.75 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: -0.93 Total: -11.01 kcal Atomic # 7 Polarization: -55.70 SS G_CDS: -0.19 Total: -55.89 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 3.31 Total: 3.31 kcal Total: -28.28 -6.70 -34.99 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258649792.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.841 kcal (2) G-P(sol) polarization free energy of solvation -28.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds