Wall clock time and date at job start Mon Mar 30 2020 01:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 119.99739 * 2 1 4 4 H 1.48500 * 109.46865 * 239.99881 * 3 2 1 5 5 H 1.48497 * 109.47422 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46948 * 120.00200 * 3 2 1 7 7 C 1.37875 * 120.00004 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00268 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00062 * 359.97438 * 7 2 1 10 10 H 1.09010 * 109.50345 * 59.92313 * 9 7 2 11 11 C 1.53035 * 109.50388 * 299.80528 * 9 7 2 12 12 N 1.46848 * 109.52142 * 180.87796 * 11 9 7 13 13 C 1.46847 * 111.19788 * 61.74047 * 12 11 9 14 14 C 1.53034 * 109.52486 * 298.25416 * 13 12 11 15 15 C 1.53114 * 109.50338 * 179.97438 * 9 7 2 16 16 H 1.09001 * 109.52084 * 57.69297 * 15 9 7 17 17 N 1.46897 * 109.52745 * 297.50142 * 15 9 7 18 18 H 0.97004 * 120.00478 * 0.02562 * 1 2 3 19 19 H 1.09000 * 109.45907 * 300.89146 * 11 9 7 20 20 H 1.08999 * 109.46252 * 60.87722 * 11 9 7 21 21 H 1.00897 * 111.00120 * 297.64369 * 12 11 9 22 22 H 1.08999 * 109.46634 * 178.23927 * 13 12 11 23 23 H 1.09006 * 109.46422 * 58.27823 * 13 12 11 24 24 H 1.08997 * 109.50792 * 299.24185 * 14 13 12 25 25 H 1.09006 * 109.50471 * 179.11839 * 14 13 12 26 26 H 1.00898 * 111.00301 * 180.31432 * 17 15 9 27 27 H 1.00906 * 110.99765 * 304.27389 * 17 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 1 0.6227 -2.5574 -0.8872 11 6 0.3751 -2.5823 1.2538 12 7 -0.3433 -3.8630 1.2659 13 6 0.5905 -4.9952 1.3142 14 6 1.4728 -4.9841 0.0638 15 6 2.2454 -3.6635 0.0015 16 1 2.9001 -3.5835 0.8692 17 7 3.0494 -3.6222 -1.2272 18 1 -0.4851 0.8400 -0.0004 19 1 1.0031 -2.5097 2.1418 20 1 -0.3437 -1.7629 1.2492 21 1 -0.9620 -3.9381 0.4724 22 1 0.0284 -5.9283 1.3537 23 1 1.2175 -4.9114 2.2019 24 1 0.8477 -5.0818 -0.8237 25 1 2.1764 -5.8156 0.1075 26 1 3.7101 -4.3844 -1.2528 27 1 2.4594 -3.6273 -2.0458 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258649792.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:05 Heat of formation + Delta-G solvation = -33.664461 kcal Electronic energy + Delta-G solvation = -10318.194304 eV Core-core repulsion = 8495.034435 eV Total energy + Delta-G solvation = -1823.159869 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.78929 -35.00053 -34.74786 -31.31922 -29.57867 -26.57602 -23.44200 -23.05681 -21.01342 -18.38514 -17.05417 -16.32865 -16.30501 -15.35362 -15.13707 -14.57356 -14.28358 -13.80820 -13.10703 -12.83957 -12.64162 -12.38091 -12.24029 -12.01343 -11.86697 -11.16811 -10.99465 -10.40710 -9.41753 -9.00695 -8.04236 -6.11814 1.43285 1.44048 1.51983 2.47564 3.22408 3.63104 3.94406 4.01972 4.19056 4.42964 4.71228 4.74012 4.77588 4.95490 5.10479 5.22438 5.30756 5.64193 5.86545 5.94482 6.17965 6.46224 6.57820 6.66617 6.84505 6.97816 7.53076 9.00502 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.060560 B = 0.016890 C = 0.014096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.241814 B = 1657.419335 C = 1985.880537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.008 3.992 3 Si 0.951 3.049 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.503 4.503 8 H 0.049 0.951 9 C 0.028 3.972 10 H -0.008 1.008 11 C 0.072 3.928 12 N -0.695 5.695 13 C 0.061 3.939 14 C -0.178 4.178 15 C 0.103 3.897 16 H 0.052 0.948 17 N -0.839 5.839 18 H 0.258 0.742 19 H 0.034 0.966 20 H 0.073 0.927 21 H 0.334 0.666 22 H 0.089 0.911 23 H 0.063 0.937 24 H 0.053 0.947 25 H 0.077 0.923 26 H 0.338 0.662 27 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.073 -8.118 0.053 8.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.190 4.190 3 Si 0.778 3.222 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.542 4.542 8 H 0.067 0.933 9 C 0.008 3.992 10 H 0.010 0.990 11 C -0.058 4.058 12 N -0.323 5.323 13 C -0.069 4.069 14 C -0.219 4.219 15 C -0.009 4.009 16 H 0.070 0.930 17 N -0.368 5.368 18 H 0.068 0.932 19 H 0.053 0.947 20 H 0.091 0.909 21 H 0.150 0.850 22 H 0.107 0.893 23 H 0.082 0.918 24 H 0.072 0.928 25 H 0.096 0.904 26 H 0.151 0.849 27 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.095 -7.271 1.022 7.636 hybrid contribution 0.267 0.218 -1.222 1.270 sum 2.362 -7.054 -0.201 7.441 Atomic orbital electron populations 1.69971 1.06874 1.26940 1.52482 1.25694 0.95663 1.02123 0.95491 0.85720 0.78358 0.79655 0.78493 1.20247 1.21105 1.19978 1.21311 0.92887 0.91395 1.48589 0.93263 1.19251 0.93087 0.92969 0.93912 0.98954 1.21914 0.96839 0.90381 0.96619 1.60801 1.20969 1.02759 1.47741 1.22001 0.94056 0.94299 0.96562 1.23055 1.00369 0.98774 0.99693 1.21426 0.93677 0.93618 0.92182 0.92951 1.58658 1.21945 1.52197 1.03959 0.93242 0.94710 0.90867 0.84978 0.89275 0.91803 0.92783 0.90392 0.84866 0.85228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.64 11.34 21.45 0.24 -53.39 15 2 C 0.01 0.43 5.30 84.65 0.45 0.88 15 3 Si 0.95 45.04 29.54 68.60 2.03 47.06 15 4 H -0.28 -12.95 7.11 99.48 0.71 -12.24 15 5 H -0.29 -13.22 7.11 99.48 0.71 -12.51 15 6 H -0.27 -12.70 7.11 99.48 0.71 -11.99 15 7 C -0.50 -28.08 8.23 25.60 0.21 -27.87 15 8 H 0.05 2.81 7.74 -2.91 -0.02 2.79 15 9 C 0.03 1.39 1.88 -11.49 -0.02 1.37 15 10 H -0.01 -0.42 8.14 -2.38 -0.02 -0.44 15 11 C 0.07 3.48 5.60 86.32 0.48 3.96 15 12 N -0.70 -27.20 6.87 -514.01 -3.53 -30.73 15 13 C 0.06 1.96 6.55 86.32 0.57 2.52 15 14 C -0.18 -5.61 5.65 30.65 0.17 -5.44 15 15 C 0.10 4.11 2.68 45.00 0.12 4.23 15 16 H 0.05 2.23 8.14 -2.39 -0.02 2.21 15 17 N -0.84 -30.93 8.91 -168.34 -1.50 -32.43 15 18 H 0.26 14.47 8.31 -92.71 -0.77 13.70 15 19 H 0.03 1.71 8.14 -2.39 -0.02 1.69 15 20 H 0.07 4.02 6.11 -2.39 -0.01 4.00 15 21 H 0.33 12.71 8.86 -89.70 -0.79 11.92 15 22 H 0.09 2.33 8.14 -2.39 -0.02 2.31 15 23 H 0.06 2.06 8.14 -2.38 -0.02 2.04 15 24 H 0.05 1.71 8.14 -2.39 -0.02 1.69 15 25 H 0.08 2.04 8.14 -2.38 -0.02 2.02 15 26 H 0.34 10.04 9.04 -89.70 -0.81 9.23 15 27 H 0.34 12.10 8.98 -89.69 -0.81 11.30 15 Total: -1.00 -60.11 219.91 -2.01 -62.12 By element: Atomic # 1 Polarization: 28.94 SS G_CDS: -1.23 Total: 27.71 kcal Atomic # 6 Polarization: -22.32 SS G_CDS: 1.98 Total: -20.34 kcal Atomic # 7 Polarization: -111.76 SS G_CDS: -4.79 Total: -116.55 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.06 kcal Total: -60.11 -2.01 -62.12 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258649792.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.456 kcal (2) G-P(sol) polarization free energy of solvation -60.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds