Wall clock time and date at job start Mon Mar 30 2020 01:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00322 * 2 1 4 4 H 1.48506 * 109.46953 * 85.09383 * 3 2 1 5 5 H 1.48491 * 109.47525 * 205.09418 * 3 2 1 6 6 H 1.48503 * 109.46806 * 325.09782 * 3 2 1 7 7 C 1.37881 * 119.99996 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99892 * 172.44786 * 7 2 1 9 9 C 1.50693 * 119.99964 * 352.45210 * 7 2 1 10 10 H 1.09002 * 109.50786 * 56.37434 * 9 7 2 11 11 C 1.53041 * 109.50453 * 296.29781 * 9 7 2 12 12 N 1.46845 * 109.52588 * 180.88104 * 11 9 7 13 13 C 1.46851 * 111.19765 * 61.73981 * 12 11 9 14 14 C 1.53032 * 109.52405 * 298.25892 * 13 12 11 15 15 C 1.53116 * 109.50643 * 176.49407 * 9 7 2 16 16 H 1.08999 * 109.52270 * 297.50542 * 15 9 7 17 17 N 1.46901 * 109.52321 * 57.68846 * 15 9 7 18 18 H 0.96996 * 119.99680 * 0.02562 * 1 2 3 19 19 H 1.09004 * 109.46119 * 300.89724 * 11 9 7 20 20 H 1.08998 * 109.46215 * 60.86865 * 11 9 7 21 21 H 1.00898 * 111.00238 * 185.83618 * 12 11 9 22 22 H 1.09000 * 109.46234 * 58.27594 * 13 12 11 23 23 H 1.09002 * 109.46190 * 178.25196 * 13 12 11 24 24 H 1.08997 * 109.50338 * 179.12273 * 14 13 12 25 25 H 1.08999 * 109.50007 * 299.19971 * 14 13 12 26 26 H 1.00904 * 111.00403 * 180.02562 * 17 15 9 27 27 H 1.00902 * 111.00073 * 303.95539 * 17 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3930 2.1062 1.3950 5 1 3.5947 1.4124 -0.5937 6 1 1.5023 2.6205 -0.8011 7 6 2.0045 -1.1941 0.0005 8 1 3.0776 -1.1982 -0.1224 9 6 1.2608 -2.4934 0.1725 10 1 0.4933 -2.5781 -0.5968 11 6 0.6047 -2.5275 1.5547 12 7 -0.1026 -3.8023 1.7310 13 6 0.8257 -4.9382 1.6636 14 6 1.4883 -4.9761 0.2847 15 6 2.2407 -3.6635 0.0491 16 1 2.6782 -3.6685 -0.9492 17 7 3.3046 -3.5208 1.0519 18 1 -0.4849 0.8400 -0.0004 19 1 1.3714 -2.4282 2.3232 20 1 -0.1042 -1.7040 1.6406 21 1 -0.6223 -3.8109 2.5957 22 1 1.5913 -4.8277 2.4316 23 1 0.2772 -5.8657 1.8284 24 1 2.1887 -5.8101 0.2404 25 1 0.7245 -5.1012 -0.4827 26 1 3.9644 -4.2817 0.9900 27 1 3.7704 -2.6304 0.9607 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258649799.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:06 Heat of formation + Delta-G solvation = -31.062912 kcal Electronic energy + Delta-G solvation = -10375.208105 eV Core-core repulsion = 8552.161047 eV Total energy + Delta-G solvation = -1823.047058 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 170.111 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.61011 -35.01955 -34.43191 -31.31745 -29.89855 -26.71746 -23.73028 -23.13296 -19.72873 -18.44680 -17.28010 -16.47605 -16.11110 -15.59395 -14.98505 -14.70761 -14.28108 -13.51537 -13.36827 -12.90551 -12.58981 -12.41727 -12.15067 -11.98831 -11.69233 -10.89339 -10.67439 -10.45479 -9.47973 -8.90632 -8.09785 -6.20133 1.41567 1.43085 1.52334 2.43929 3.17425 3.68058 3.94725 4.21491 4.30588 4.54590 4.77106 4.93648 4.97495 5.02164 5.24309 5.29280 5.36191 5.58547 5.85036 5.93691 6.21551 6.49829 6.57167 6.80053 6.91417 6.93413 7.46878 8.98048 Molecular weight = 170.11amu Principal moments of inertia in cm(-1) A = 0.067707 B = 0.016536 C = 0.014578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 413.447300 B = 1692.896073 C = 1920.224921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.012 3.988 3 Si 0.954 3.046 4 H -0.277 1.277 5 H -0.266 1.266 6 H -0.288 1.288 7 C -0.527 4.527 8 H 0.057 0.943 9 C 0.057 3.943 10 H -0.008 1.008 11 C 0.096 3.904 12 N -0.704 5.704 13 C 0.072 3.928 14 C -0.105 4.105 15 C 0.098 3.902 16 H 0.009 0.991 17 N -0.835 5.835 18 H 0.260 0.740 19 H 0.010 0.990 20 H 0.044 0.956 21 H 0.335 0.665 22 H 0.033 0.967 23 H 0.080 0.920 24 H 0.080 0.920 25 H 0.054 0.946 26 H 0.336 0.664 27 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.212 -6.676 2.615 8.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.187 4.187 3 Si 0.780 3.220 4 H -0.203 1.203 5 H -0.190 1.190 6 H -0.214 1.214 7 C -0.565 4.565 8 H 0.076 0.924 9 C 0.038 3.962 10 H 0.010 0.990 11 C -0.033 4.033 12 N -0.335 5.335 13 C -0.057 4.057 14 C -0.143 4.143 15 C -0.014 4.014 16 H 0.027 0.973 17 N -0.367 5.367 18 H 0.069 0.931 19 H 0.028 0.972 20 H 0.063 0.937 21 H 0.151 0.849 22 H 0.051 0.949 23 H 0.098 0.902 24 H 0.098 0.902 25 H 0.073 0.927 26 H 0.148 0.852 27 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.299 -6.669 2.478 7.842 hybrid contribution 1.195 1.318 -0.125 1.783 sum 4.493 -5.352 2.352 7.373 Atomic orbital electron populations 1.70116 1.07371 1.27104 1.51062 1.25773 0.95544 1.02478 0.94862 0.85614 0.78862 0.79623 0.77936 1.20324 1.19023 1.21359 1.21418 0.93632 0.92008 1.49486 0.92441 1.18605 0.92670 0.92183 0.92749 0.98960 1.21563 0.94865 0.89123 0.97787 1.60397 1.28766 1.03623 1.40731 1.21746 0.94121 0.93240 0.96632 1.21594 0.98736 0.96403 0.97581 1.21312 0.92823 0.95903 0.91357 0.97272 1.58695 1.16504 1.07549 1.53931 0.93148 0.97218 0.93747 0.84865 0.94866 0.90218 0.90184 0.92734 0.85152 0.84413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.46 11.96 21.45 0.26 -54.20 15 2 C 0.01 0.69 5.23 84.66 0.44 1.13 15 3 Si 0.95 43.76 29.54 68.60 2.03 45.79 15 4 H -0.28 -12.48 7.11 99.48 0.71 -11.77 15 5 H -0.27 -11.67 7.11 99.48 0.71 -10.97 15 6 H -0.29 -13.11 7.11 99.48 0.71 -12.41 15 7 C -0.53 -28.85 7.89 25.60 0.20 -28.64 15 8 H 0.06 3.02 6.58 -2.91 -0.02 3.00 15 9 C 0.06 2.96 1.97 -11.49 -0.02 2.93 15 10 H -0.01 -0.47 8.13 -2.39 -0.02 -0.49 15 11 C 0.10 4.75 5.49 86.33 0.47 5.22 15 12 N -0.70 -29.06 6.85 -514.00 -3.52 -32.58 15 13 C 0.07 2.49 6.40 86.32 0.55 3.04 15 14 C -0.10 -3.70 5.76 30.64 0.18 -3.53 15 15 C 0.10 4.06 3.11 44.99 0.14 4.20 15 16 H 0.01 0.40 8.14 -2.39 -0.02 0.38 15 17 N -0.84 -30.59 7.90 -168.35 -1.33 -31.92 15 18 H 0.26 14.67 8.31 -92.71 -0.77 13.90 15 19 H 0.01 0.49 7.69 -2.38 -0.02 0.47 15 20 H 0.04 2.49 6.70 -2.39 -0.02 2.48 15 21 H 0.33 12.17 8.90 -89.70 -0.80 11.37 15 22 H 0.03 1.17 7.69 -2.39 -0.02 1.15 15 23 H 0.08 2.30 8.14 -2.39 -0.02 2.28 15 24 H 0.08 2.29 8.14 -2.39 -0.02 2.27 15 25 H 0.05 2.02 8.14 -2.39 -0.02 2.00 15 26 H 0.34 9.91 9.04 -89.69 -0.81 9.10 15 27 H 0.34 13.27 7.13 -89.69 -0.64 12.63 15 Total: -1.00 -61.49 216.18 -1.67 -63.16 By element: Atomic # 1 Polarization: 26.46 SS G_CDS: -1.07 Total: 25.39 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: 1.97 Total: -15.64 kcal Atomic # 7 Polarization: -114.11 SS G_CDS: -4.59 Total: -118.70 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -61.49 -1.67 -63.16 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258649799.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.098 kcal (2) G-P(sol) polarization free energy of solvation -61.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds