Wall clock time and date at job start Mon Mar 30 2020 01:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86792 * 120.00222 * 2 1 4 4 H 1.48496 * 109.47486 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47026 * 300.00321 * 3 2 1 6 6 H 1.48507 * 109.46953 * 60.00010 * 3 2 1 7 7 C 1.37881 * 119.99894 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00133 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00228 * 359.97438 * 7 2 1 10 10 C 1.50697 * 109.47562 * 180.02562 * 9 7 2 11 11 N 1.31253 * 128.01613 * 89.97036 * 10 9 7 12 12 N 1.26816 * 114.23217 * 180.02562 * 11 10 9 13 13 N 1.27914 * 118.99489 * 359.97438 * 12 11 10 14 14 S 1.56819 * 107.81723 * 0.02562 * 13 12 11 15 15 H 0.96992 * 120.00278 * 0.02562 * 1 2 3 16 16 H 1.09002 * 109.47390 * 59.99747 * 9 7 2 17 17 H 1.09010 * 109.46903 * 300.00232 * 9 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3963 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2303 -3.6447 -0.0005 11 7 2.7559 -4.2588 1.0335 12 7 3.5565 -5.1947 0.7314 13 7 3.7741 -5.4503 -0.5030 14 16 2.9194 -4.4512 -1.3577 15 1 -0.4850 0.8400 -0.0004 16 1 0.6240 -2.5568 -0.8903 17 1 0.6247 -2.5571 0.8897 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259617405.mol2 17 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:02 Heat of formation + Delta-G solvation = 76.021114 kcal Electronic energy + Delta-G solvation = -7585.633068 eV Core-core repulsion = 5872.890293 eV Total energy + Delta-G solvation = -1712.742775 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 171.016 amu Computer time = 0.06 seconds Orbital eigenvalues (eV) -41.28654 -34.27142 -32.61220 -29.79928 -26.29500 -23.57083 -20.76405 -19.47240 -16.81887 -15.65943 -15.16330 -14.15184 -12.99245 -12.63170 -12.53085 -11.60278 -11.10949 -10.99988 -10.55492 -10.51637 -10.29844 -9.93970 -9.84829 -9.03416 -8.69700 -6.33516 -4.40806 0.60531 1.34040 1.95551 2.62074 3.17204 3.25654 3.30270 4.22864 4.69512 5.03703 5.32840 5.91456 6.96541 7.08573 7.58687 7.82590 8.60338 8.91970 9.25324 10.76475 Molecular weight = 171.02amu Principal moments of inertia in cm(-1) A = 0.089699 B = 0.013018 C = 0.012785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 312.080338 B = 2150.367632 C = 2189.554275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.067 3.933 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.525 4.525 8 H 0.062 0.938 9 C 0.089 3.911 10 C 0.053 3.947 11 N -0.292 5.292 12 N -0.055 5.055 13 N -0.338 5.338 14 S 0.357 5.643 15 H 0.268 0.732 16 H 0.058 0.942 17 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.068 -3.402 -3.846 5.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.137 4.137 3 Si 0.733 3.267 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.565 4.565 8 H 0.080 0.920 9 C 0.048 3.952 10 C -0.232 4.232 11 N -0.142 5.142 12 N -0.050 5.050 13 N -0.324 5.324 14 S 0.481 5.519 15 H 0.078 0.922 16 H 0.076 0.924 17 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.799 -4.358 -3.928 6.501 hybrid contribution -0.005 1.440 0.468 1.514 sum 2.794 -2.918 -3.460 5.319 Atomic orbital electron populations 1.69924 1.06061 1.27640 1.48642 1.24955 0.95018 0.99504 0.94186 0.86301 0.80006 0.82459 0.77970 1.19529 1.20527 1.20522 1.20873 0.93162 0.88667 1.53780 0.92016 1.18233 0.90487 0.85553 1.00975 1.32546 1.00088 1.00596 0.89938 1.73048 1.08895 1.05319 1.26971 1.75617 1.11072 1.10892 1.07382 1.79182 1.24774 1.24786 1.03641 1.82225 1.29499 1.19419 1.20751 0.92204 0.92422 0.91743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.91 13.29 55.43 0.74 -23.17 13 2 C 0.07 1.75 5.46 -17.82 -0.10 1.65 13 3 Si 0.91 20.15 29.54 -169.99 -5.02 15.13 13 4 H -0.27 -6.01 7.11 56.52 0.40 -5.60 13 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 13 6 H -0.28 -6.20 7.11 56.52 0.40 -5.80 13 7 C -0.52 -13.53 9.09 -34.44 -0.31 -13.84 13 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 13 9 C 0.09 2.07 5.60 -29.04 -0.16 1.91 13 10 C 0.05 1.12 7.11 -12.53 -0.09 1.03 13 11 N -0.29 -6.51 11.89 33.05 0.39 -6.12 13 12 N -0.05 -1.17 12.75 60.35 0.77 -0.40 13 13 N -0.34 -6.56 12.66 60.35 0.76 -5.79 13 14 S 0.36 6.21 23.49 -107.50 -2.53 3.68 13 15 H 0.27 6.81 8.31 -40.82 -0.34 6.47 13 16 H 0.06 1.31 8.14 -51.93 -0.42 0.88 13 17 H 0.06 1.59 8.14 -51.92 -0.42 1.17 13 LS Contribution 184.54 15.07 2.78 2.78 Total: -1.00 -27.36 184.54 -3.15 -30.52 By element: Atomic # 1 Polarization: -6.99 SS G_CDS: -0.39 Total: -7.37 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: -0.66 Total: -9.25 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: 2.66 Total: -35.49 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Atomic # 16 Polarization: 6.21 SS G_CDS: -2.53 Total: 3.68 kcal Total LS contribution 2.78 Total: 2.78 kcal Total: -27.36 -3.15 -30.52 kcal The number of atoms in the molecule is 17 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259617405.mol2 17 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.537 kcal (2) G-P(sol) polarization free energy of solvation -27.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.06 seconds