Wall clock time and date at job start Mon Mar 30 2020 01:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86792 * 120.00222 * 2 1 4 4 H 1.48496 * 109.47486 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47026 * 300.00321 * 3 2 1 6 6 H 1.48507 * 109.46953 * 60.00010 * 3 2 1 7 7 C 1.37881 * 119.99894 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00133 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00228 * 359.97438 * 7 2 1 10 10 C 1.50697 * 109.47562 * 180.02562 * 9 7 2 11 11 N 1.31253 * 128.01613 * 89.97036 * 10 9 7 12 12 N 1.26816 * 114.23217 * 180.02562 * 11 10 9 13 13 N 1.27914 * 118.99489 * 359.97438 * 12 11 10 14 14 S 1.56819 * 107.81723 * 0.02562 * 13 12 11 15 15 H 0.96992 * 120.00278 * 0.02562 * 1 2 3 16 16 H 1.09002 * 109.47390 * 59.99747 * 9 7 2 17 17 H 1.09010 * 109.46903 * 300.00232 * 9 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3963 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2303 -3.6447 -0.0005 11 7 2.7559 -4.2588 1.0335 12 7 3.5565 -5.1947 0.7314 13 7 3.7741 -5.4503 -0.5030 14 16 2.9194 -4.4512 -1.3577 15 1 -0.4850 0.8400 -0.0004 16 1 0.6240 -2.5568 -0.8903 17 1 0.6247 -2.5571 0.8897 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259617405.mol2 17 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:02 Heat of formation + Delta-G solvation = 57.300508 kcal Electronic energy + Delta-G solvation = -7586.444854 eV Core-core repulsion = 5872.890293 eV Total energy + Delta-G solvation = -1713.554561 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 171.016 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -42.91135 -36.07340 -34.40948 -31.59648 -28.04702 -25.42103 -22.46837 -21.03136 -18.75757 -17.32435 -16.97599 -15.87427 -14.58428 -14.47866 -14.30653 -13.36537 -12.87927 -12.72100 -12.22265 -12.17009 -12.13529 -11.62786 -11.53000 -10.68499 -10.65679 -8.30242 -6.43847 -0.98352 -0.21771 0.41155 0.96704 1.43082 1.46182 1.56990 2.38420 3.00266 3.08038 3.71107 4.19401 5.10547 5.18931 5.59951 5.90327 6.62532 7.25723 7.31759 8.80309 Molecular weight = 171.02amu Principal moments of inertia in cm(-1) A = 0.089699 B = 0.013018 C = 0.012785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 312.080338 B = 2150.367632 C = 2189.554275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.022 3.978 3 Si 0.966 3.034 4 H -0.270 1.270 5 H -0.269 1.269 6 H -0.279 1.279 7 C -0.540 4.540 8 H 0.056 0.944 9 C 0.097 3.903 10 C 0.015 3.985 11 N -0.310 5.310 12 N -0.074 5.074 13 N -0.346 5.346 14 S 0.474 5.526 15 H 0.272 0.728 16 H 0.062 0.938 17 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.816 -3.273 -4.922 6.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.179 4.179 3 Si 0.791 3.209 4 H -0.194 1.194 5 H -0.194 1.194 6 H -0.204 1.204 7 C -0.580 4.580 8 H 0.074 0.926 9 C 0.056 3.944 10 C -0.269 4.269 11 N -0.162 5.162 12 N -0.068 5.068 13 N -0.332 5.332 14 S 0.598 5.402 15 H 0.081 0.919 16 H 0.080 0.920 17 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 3.543 -4.230 -5.009 7.452 hybrid contribution -0.217 1.316 0.695 1.504 sum 3.326 -2.915 -4.314 6.178 Atomic orbital electron populations 1.70005 1.07309 1.28637 1.49433 1.25726 0.95765 1.02623 0.93782 0.85374 0.78703 0.78671 0.78199 1.19389 1.19447 1.20423 1.21136 0.93105 0.90114 1.53669 0.92588 1.17913 0.90617 0.85853 1.00029 1.32144 1.01219 1.01383 0.92184 1.73055 1.09125 1.05643 1.28335 1.75700 1.11855 1.11326 1.07965 1.78956 1.25040 1.25468 1.03743 1.81798 1.25913 1.15863 1.16658 0.91878 0.92036 0.94205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.36 13.29 21.45 0.28 -49.07 13 2 C 0.02 1.14 5.46 84.66 0.46 1.60 13 3 Si 0.97 40.66 29.54 68.60 2.03 42.69 13 4 H -0.27 -11.18 7.11 99.48 0.71 -10.47 13 5 H -0.27 -10.83 7.11 99.48 0.71 -10.12 13 6 H -0.28 -11.61 7.11 99.48 0.71 -10.91 13 7 C -0.54 -27.70 9.09 25.60 0.23 -27.47 13 8 H 0.06 2.87 7.74 -2.91 -0.02 2.85 13 9 C 0.10 4.53 5.60 29.10 0.16 4.69 13 10 C 0.01 0.60 7.11 88.19 0.63 1.23 13 11 N -0.31 -13.66 11.89 -49.35 -0.59 -14.25 13 12 N -0.07 -3.07 12.75 37.02 0.47 -2.60 13 13 N -0.35 -12.59 12.66 37.02 0.47 -12.12 13 14 S 0.47 15.15 23.49 -56.49 -1.33 13.83 13 15 H 0.27 13.73 8.31 -92.71 -0.77 12.96 13 16 H 0.06 2.77 8.14 -2.39 -0.02 2.75 13 17 H 0.04 2.02 8.14 -2.38 -0.02 2.00 13 Total: -1.00 -56.53 184.54 4.11 -52.42 By element: Atomic # 1 Polarization: -12.23 SS G_CDS: 1.29 Total: -10.94 kcal Atomic # 6 Polarization: -21.44 SS G_CDS: 1.49 Total: -19.95 kcal Atomic # 7 Polarization: -78.68 SS G_CDS: 0.64 Total: -78.04 kcal Atomic # 14 Polarization: 40.66 SS G_CDS: 2.03 Total: 42.69 kcal Atomic # 16 Polarization: 15.15 SS G_CDS: -1.33 Total: 13.83 kcal Total: -56.53 4.11 -52.42 kcal The number of atoms in the molecule is 17 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259617405.mol2 17 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.717 kcal (2) G-P(sol) polarization free energy of solvation -56.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds