Wall clock time and date at job start Mon Mar 30 2020 01:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30988 * 1 3 3 Si 1.86800 * 120.00119 * 2 1 4 4 H 1.48500 * 109.47191 * 274.98158 * 3 2 1 5 5 H 1.48500 * 109.47379 * 34.98356 * 3 2 1 6 6 H 1.48505 * 109.47293 * 154.98606 * 3 2 1 7 7 C 1.39978 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99795 * 186.44727 * 7 2 1 9 9 C 1.39801 * 119.99727 * 6.45077 * 7 2 1 10 10 S 1.76207 * 126.26763 * 353.48404 * 9 7 2 11 11 C 1.70854 * 90.53315 * 180.02562 * 10 9 7 12 12 N 1.29417 * 111.06568 * 0.02562 * 11 10 9 13 13 C 1.31091 * 117.62306 * 359.97438 * 12 11 10 14 14 O 1.35633 * 123.34237 * 179.97438 * 13 12 11 15 15 H 0.97002 * 119.99367 * 0.02562 * 1 2 3 16 16 H 1.07996 * 124.46371 * 180.26851 * 11 10 9 17 17 H 0.96704 * 113.99559 * 90.03199 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 14 2.2439 1.6177 0.0000 4 1 2.3861 2.1072 -1.3948 5 1 1.4981 2.6200 0.8027 6 1 3.5902 1.4120 0.5920 7 6 2.0098 -1.2122 0.0005 8 1 3.0846 -1.2151 0.1056 9 6 1.3174 -2.4191 -0.1349 10 16 -0.4331 -2.6200 -0.1554 11 6 -0.2532 -4.3084 -0.3456 12 7 0.9968 -4.6415 -0.3841 13 6 1.8849 -3.6832 -0.2775 14 8 3.2234 -3.9009 -0.3026 15 1 -0.4849 0.8401 -0.0004 16 1 -1.0742 -5.0051 -0.4272 17 1 3.6110 -3.8654 -1.1878 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259663709.mol2 17 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:19 Heat of formation + Delta-G solvation = -48.386835 kcal Electronic energy + Delta-G solvation = -7795.353245 eV Core-core repulsion = 6044.922985 eV Total energy + Delta-G solvation = -1750.430259 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 171.009 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -39.90097 -36.67523 -36.15682 -31.35245 -27.07976 -24.90463 -21.12407 -20.27637 -18.19800 -17.65252 -16.86012 -15.69548 -15.21579 -14.35435 -13.84335 -13.72380 -13.12116 -13.06798 -12.48068 -12.00782 -11.58778 -11.20858 -9.91915 -9.84848 -9.16214 -8.95884 -6.63003 0.52781 1.34761 1.37473 1.51506 1.56809 1.86182 2.13840 2.19139 2.87038 3.68075 4.65401 4.84078 5.05760 5.57719 5.85648 6.08981 6.34604 7.22054 7.61946 7.90047 Molecular weight = 171.01amu Principal moments of inertia in cm(-1) A = 0.066798 B = 0.020170 C = 0.015613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.076364 B = 1387.884341 C = 1792.957290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.012 3.988 3 Si 1.019 2.981 4 H -0.255 1.255 5 H -0.256 1.256 6 H -0.255 1.255 7 C -0.371 4.371 8 H 0.104 0.896 9 C -0.049 4.049 10 S 0.145 5.855 11 C -0.202 4.202 12 N -0.469 5.469 13 C -0.033 4.033 14 O -0.467 6.467 15 H 0.315 0.685 16 H 0.182 0.818 17 H 0.363 0.637 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.034 6.173 -1.273 6.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.209 4.209 3 Si 0.837 3.163 4 H -0.179 1.179 5 H -0.179 1.179 6 H -0.179 1.179 7 C -0.407 4.407 8 H 0.122 0.878 9 C -0.174 4.174 10 S 0.393 5.607 11 C -0.493 4.493 12 N -0.189 5.189 13 C -0.206 4.206 14 O -0.269 6.269 15 H 0.129 0.871 16 H 0.199 0.801 17 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -1.028 6.155 -0.643 6.274 hybrid contribution 1.221 -0.060 -0.584 1.355 sum 0.193 6.095 -1.227 6.221 Atomic orbital electron populations 1.69058 1.09067 1.33156 1.29593 1.27370 0.96096 1.05920 0.91557 0.84587 0.78636 0.73035 0.80089 1.17882 1.17945 1.17866 1.19542 0.96730 0.89175 1.35286 0.87786 1.23672 0.96723 0.97034 0.99923 1.83698 1.03619 1.00156 1.73244 1.27268 0.95129 1.02173 1.24692 1.64870 1.02655 1.38814 1.12568 1.18168 0.84464 0.87232 1.30717 1.84818 1.15877 1.93734 1.32507 0.87126 0.80146 0.78593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -35.46 10.80 21.85 0.24 -35.22 13 2 C 0.01 0.51 5.49 85.24 0.47 0.98 13 3 Si 1.02 32.70 29.57 68.60 2.03 34.73 13 4 H -0.25 -7.81 7.11 99.48 0.71 -7.10 13 5 H -0.26 -7.59 7.11 99.48 0.71 -6.88 13 6 H -0.26 -8.15 7.11 99.48 0.71 -7.44 13 7 C -0.37 -18.83 9.19 23.07 0.21 -18.62 13 8 H 0.10 5.10 7.85 -2.91 -0.02 5.08 13 9 C -0.05 -2.69 6.26 22.90 0.14 -2.54 13 10 S 0.14 7.25 20.30 -56.49 -1.15 6.10 13 11 C -0.20 -10.27 12.17 130.60 1.59 -8.68 13 12 N -0.47 -26.45 10.50 -314.22 -3.30 -29.74 13 13 C -0.03 -1.86 8.01 85.06 0.68 -1.18 13 14 O -0.47 -24.25 13.48 -89.47 -1.21 -25.46 13 15 H 0.32 12.34 8.30 -92.71 -0.77 11.57 13 16 H 0.18 7.83 8.06 -2.91 -0.02 7.81 13 17 H 0.36 15.25 9.06 -74.05 -0.67 14.58 13 Total: -1.00 -62.37 180.34 0.34 -62.03 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: 0.63 Total: 17.61 kcal Atomic # 6 Polarization: -33.14 SS G_CDS: 3.09 Total: -30.04 kcal Atomic # 7 Polarization: -61.90 SS G_CDS: -3.06 Total: -64.96 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: -1.21 Total: -25.46 kcal Atomic # 14 Polarization: 32.70 SS G_CDS: 2.03 Total: 34.73 kcal Atomic # 16 Polarization: 7.25 SS G_CDS: -1.15 Total: 6.10 kcal Total: -62.37 0.34 -62.03 kcal The number of atoms in the molecule is 17 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259663709.mol2 17 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.640 kcal (2) G-P(sol) polarization free energy of solvation -62.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds