Wall clock time and date at job start Mon Mar 30 2020 01:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42901 * 113.11128 * 2 1 4 4 C 1.52369 * 114.10274 * 132.43566 * 2 1 3 5 5 N 1.45716 * 87.96171 * 113.99645 * 4 2 1 6 6 C 1.37096 * 133.17341 * 180.26553 * 5 4 2 7 7 H 1.08000 * 119.99947 * 331.65500 * 6 5 4 8 8 C 1.38949 * 120.00003 * 151.66727 * 6 5 4 9 9 N 1.31418 * 120.00013 * 163.67330 * 8 6 5 10 10 Si 1.86797 * 120.00078 * 343.67147 * 8 6 5 11 11 H 1.48500 * 109.47039 * 95.55303 * 10 8 6 12 12 H 1.48505 * 109.47281 * 215.55429 * 10 8 6 13 13 H 1.48501 * 109.46941 * 335.55160 * 10 8 6 14 14 C 1.33833 * 93.65082 * 359.97438 * 5 4 2 15 15 O 1.21293 * 133.24453 * 179.97438 * 14 5 4 16 16 H 1.08997 * 109.46832 * 172.79298 * 1 2 3 17 17 H 1.08999 * 109.46891 * 292.79492 * 1 2 3 18 18 H 1.08998 * 109.46863 * 52.79381 * 1 2 3 19 19 H 0.96699 * 113.99708 * 307.20875 * 3 2 1 20 20 H 1.09004 * 113.46915 * 359.22050 * 4 2 1 21 21 H 1.08996 * 113.47065 * 228.77070 * 4 2 1 22 22 H 0.97001 * 119.99937 * 180.02562 * 9 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0909 1.3143 0.0000 4 6 2.1523 -0.9385 1.0265 5 7 2.6717 -1.7252 -0.0846 6 6 3.4234 -2.8697 -0.1530 7 1 4.1118 -3.1119 0.6431 8 6 3.2999 -3.7178 -1.2467 9 7 4.2205 -4.6256 -1.4815 10 14 1.8250 -3.5675 -2.3832 11 1 2.1815 -2.7165 -3.5468 12 1 1.4278 -4.9167 -2.8598 13 1 0.6933 -2.9498 -1.6464 14 6 2.1388 -0.9228 -1.0137 15 8 2.1464 -0.9361 -2.2265 16 1 -0.3633 -1.0195 -0.1289 17 1 -0.3633 0.3982 0.9474 18 1 -0.3633 0.6214 -0.8185 19 1 1.7540 1.8857 -0.7036 20 1 1.4169 -1.4713 1.6295 21 1 2.9310 -0.4694 1.6277 22 1 4.1345 -5.2174 -2.2453 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259732472.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:05 Heat of formation + Delta-G solvation = -44.008507 kcal Electronic energy + Delta-G solvation = -10228.031081 eV Core-core repulsion = 8170.870904 eV Total energy + Delta-G solvation = -2057.160177 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 171.068 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -40.53592 -35.97670 -35.14271 -32.74401 -30.29035 -27.10035 -24.05332 -22.28508 -19.13050 -17.52078 -16.43038 -15.95594 -15.04310 -14.54341 -13.95830 -13.24951 -13.01538 -12.54112 -12.21903 -12.02454 -11.65967 -11.15866 -10.77177 -10.41794 -10.38877 -9.89142 -9.19364 -8.16158 -7.97602 -6.45821 -4.10842 3.18818 3.45717 3.54233 3.77199 4.29701 4.37709 4.42475 4.89156 5.05343 5.16396 5.32306 5.80234 5.99844 6.05452 6.13743 6.31886 7.21809 7.68319 7.84813 8.27859 8.64722 9.09408 9.76785 10.61067 Molecular weight = 171.07amu Principal moments of inertia in cm(-1) A = 0.065542 B = 0.020954 C = 0.018533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 427.102628 B = 1335.919399 C = 1510.472768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.068 3.932 3 O -0.537 6.537 4 C 0.100 3.900 5 N -0.447 5.447 6 C -0.329 4.329 7 H 0.110 0.890 8 C 0.067 3.933 9 N -0.858 5.858 10 Si 0.926 3.074 11 H -0.257 1.257 12 H -0.308 1.308 13 H -0.284 1.284 14 C 0.417 3.583 15 O -0.550 6.550 16 H 0.071 0.929 17 H 0.070 0.930 18 H 0.065 0.935 19 H 0.380 0.620 20 H 0.084 0.916 21 H 0.085 0.915 22 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.236 7.154 3.962 10.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.023 3.977 3 O -0.341 6.341 4 C -0.023 4.023 5 N -0.168 5.168 6 C -0.454 4.454 7 H 0.128 0.872 8 C -0.142 4.142 9 N -0.493 5.493 10 Si 0.757 3.243 11 H -0.183 1.183 12 H -0.238 1.238 13 H -0.211 1.211 14 C 0.205 3.795 15 O -0.434 6.434 16 H 0.090 0.910 17 H 0.089 0.911 18 H 0.084 0.916 19 H 0.228 0.772 20 H 0.102 0.898 21 H 0.104 0.896 22 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.663 6.567 3.798 10.097 hybrid contribution -0.920 0.079 -0.891 1.283 sum -7.583 6.647 2.907 10.494 Atomic orbital electron populations 1.22033 0.93106 1.03508 1.02594 1.22791 0.93719 0.84174 0.96983 1.86484 1.69015 1.22354 1.56281 1.22594 0.97647 0.89914 0.92147 1.45449 1.44020 1.21994 1.05315 1.19034 1.18803 0.97662 1.09899 0.87228 1.25314 0.97744 0.94084 0.97024 1.69706 1.31801 1.19495 1.28306 0.85875 0.81554 0.74450 0.82393 1.18267 1.23757 1.21063 1.21825 0.85279 0.84360 0.88057 1.90481 1.66037 1.74775 1.12123 0.90969 0.91147 0.91581 0.77220 0.89802 0.89646 0.91119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.41 37.16 0.35 -1.97 14 2 C 0.07 1.29 2.00 -92.45 -0.19 1.11 14 3 O -0.54 -9.19 13.48 -35.23 -0.47 -9.66 14 4 C 0.10 1.94 8.39 -9.94 -0.08 1.86 14 5 N -0.45 -11.39 3.01 -130.46 -0.39 -11.79 14 6 C -0.33 -9.43 10.98 -14.93 -0.16 -9.60 14 7 H 0.11 3.18 8.06 -52.49 -0.42 2.75 14 8 C 0.07 2.00 5.49 -17.47 -0.10 1.90 14 9 N -0.86 -25.83 13.96 55.50 0.77 -25.06 14 10 Si 0.93 25.36 24.39 -169.99 -4.15 21.22 14 11 H -0.26 -7.49 6.47 56.52 0.37 -7.12 14 12 H -0.31 -8.06 7.11 56.52 0.40 -7.66 14 13 H -0.28 -7.64 6.68 56.52 0.38 -7.26 14 14 C 0.42 10.53 6.64 -16.90 -0.11 10.42 14 15 O -0.55 -15.67 13.60 5.55 0.08 -15.59 14 16 H 0.07 1.17 8.10 -51.93 -0.42 0.75 14 17 H 0.07 0.85 8.14 -51.93 -0.42 0.42 14 18 H 0.07 0.90 8.14 -51.93 -0.42 0.48 14 19 H 0.38 4.93 9.08 45.56 0.41 5.35 14 20 H 0.08 1.39 8.00 -51.93 -0.42 0.97 14 21 H 0.09 1.54 8.14 -51.93 -0.42 1.11 14 22 H 0.28 7.82 8.31 -40.82 -0.34 7.48 14 LS Contribution 197.58 15.07 2.98 2.98 Total: -1.00 -34.13 197.58 -2.79 -36.91 By element: Atomic # 1 Polarization: -1.42 SS G_CDS: -1.31 Total: -2.73 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: -0.29 Total: 3.72 kcal Atomic # 7 Polarization: -37.22 SS G_CDS: 0.38 Total: -36.84 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -0.40 Total: -25.26 kcal Atomic # 14 Polarization: 25.36 SS G_CDS: -4.15 Total: 21.22 kcal Total LS contribution 2.98 Total: 2.98 kcal Total: -34.13 -2.79 -36.91 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259732472.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.098 kcal (2) G-P(sol) polarization free energy of solvation -34.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds